miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 5' -57.3 NC_001847.1 + 112344 0.69 0.679546
Target:  5'- cCAGGUUCc----CCUcGCCCCCcaUCCCCa -3'
miRNA:   3'- -GUCCGAGuaaacGGA-UGGGGG--AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 110366 0.66 0.831201
Target:  5'- ---cCUUuugUGCCcccCCCCCUCCCCu -3'
miRNA:   3'- guccGAGuaaACGGau-GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 110064 0.79 0.187137
Target:  5'- --cGCUCAgcUUGCCUuuuuuCCCCCUCCCCc -3'
miRNA:   3'- gucCGAGUa-AACGGAu----GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 109936 0.71 0.546869
Target:  5'- --aGCcCAccUUGCCggucuUGCCCCCUCCCCu -3'
miRNA:   3'- gucCGaGUa-AACGG-----AUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 108999 1.12 0.001118
Target:  5'- cCAGGCUCAUUUGCCUACCCCCUCCCCa -3'
miRNA:   3'- -GUCCGAGUAAACGGAUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 108905 1.12 0.001118
Target:  5'- cCAGGCUCAUUUGCCUACCCCCUCCCCa -3'
miRNA:   3'- -GUCCGAGUAAACGGAUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 108668 0.69 0.659112
Target:  5'- cCAGGCcCGcc--CCUACcaguuCCCCUCCCCa -3'
miRNA:   3'- -GUCCGaGUaaacGGAUG-----GGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 108602 0.79 0.196263
Target:  5'- gGGGCUCAUUUgcaugaaagcaugGCCgaacGCCCCCggCCCCg -3'
miRNA:   3'- gUCCGAGUAAA-------------CGGa---UGGGGGa-GGGG- -5'
6510 5' -57.3 NC_001847.1 + 107897 0.7 0.60779
Target:  5'- gCGGGCggCAgugcggcGCCUucuccuuCCCCUUCCCCu -3'
miRNA:   3'- -GUCCGa-GUaaa----CGGAu------GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 105261 0.66 0.839494
Target:  5'- aGGGC-CGcc-GCCUcgccguCCCCgUCCCCg -3'
miRNA:   3'- gUCCGaGUaaaCGGAu-----GGGGgAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 104766 0.69 0.678527
Target:  5'- cCGGcGCUCGUccucGCCgggcgGCCCgccagcgCCUCCCCg -3'
miRNA:   3'- -GUC-CGAGUAaa--CGGa----UGGG-------GGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 103513 0.73 0.414586
Target:  5'- aCAGaCUCGUcuuuaUUGCCgccgucgcGCCCCCUCCCUc -3'
miRNA:   3'- -GUCcGAGUA-----AACGGa-------UGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 103205 0.7 0.587335
Target:  5'- gCAGGCUCGUccGCUUACCCgCCgcgcgagCCgCg -3'
miRNA:   3'- -GUCCGAGUAaaCGGAUGGG-GGa------GGgG- -5'
6510 5' -57.3 NC_001847.1 + 103041 0.71 0.536883
Target:  5'- gCGGGCcgCA---GCCgcguuucCCCCCUCCCCc -3'
miRNA:   3'- -GUCCGa-GUaaaCGGau-----GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 102981 0.68 0.699822
Target:  5'- gGGGUUCugc-GUCUugGCCCCCggggCCCCc -3'
miRNA:   3'- gUCCGAGuaaaCGGA--UGGGGGa---GGGG- -5'
6510 5' -57.3 NC_001847.1 + 102344 0.67 0.758981
Target:  5'- -cGGCUCcaacgcGCCguccGCCCCCggcccUCCCCc -3'
miRNA:   3'- guCCGAGuaaa--CGGa---UGGGGG-----AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 102250 0.66 0.831201
Target:  5'- -cGGCUUccccGCCgGCCCCCgaggCCUCg -3'
miRNA:   3'- guCCGAGuaaaCGGaUGGGGGa---GGGG- -5'
6510 5' -57.3 NC_001847.1 + 102187 0.66 0.839494
Target:  5'- -uGGcCUCcccgGCCUccuccGCCCCCccggCCCCg -3'
miRNA:   3'- guCC-GAGuaaaCGGA-----UGGGGGa---GGGG- -5'
6510 5' -57.3 NC_001847.1 + 99835 0.69 0.679546
Target:  5'- uUAGuGCUUugcgUUGCCcGCCCCCgCCCa -3'
miRNA:   3'- -GUC-CGAGua--AACGGaUGGGGGaGGGg -5'
6510 5' -57.3 NC_001847.1 + 92509 0.67 0.758981
Target:  5'- aGGGCacgacgUCGgcgcUGCCgcCCCCCUCCgCg -3'
miRNA:   3'- gUCCG------AGUaa--ACGGauGGGGGAGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.