miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 5' -57.3 NC_001847.1 + 46872 0.66 0.805258
Target:  5'- gCAGGCgaa---GCgCUcCCCCCgUCCCCg -3'
miRNA:   3'- -GUCCGaguaaaCG-GAuGGGGG-AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 50887 0.67 0.758981
Target:  5'- -cGGCguuuuUUUGuCCUcgccGCCCuCCUCCCCc -3'
miRNA:   3'- guCCGagu--AAAC-GGA----UGGG-GGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 58738 0.67 0.787159
Target:  5'- gGGGUgcccccGCCgcgGCCCCCggcgCCCCc -3'
miRNA:   3'- gUCCGaguaaaCGGa--UGGGGGa---GGGG- -5'
6510 5' -57.3 NC_001847.1 + 59671 0.66 0.814075
Target:  5'- --cGCcCGUgcGCuCUGgCCCCUCCCCc -3'
miRNA:   3'- gucCGaGUAaaCG-GAUgGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 63606 0.68 0.71987
Target:  5'- -uGGC-CGcgUGCCUcugcuACCCCUUCgCCCg -3'
miRNA:   3'- guCCGaGUaaACGGA-----UGGGGGAG-GGG- -5'
6510 5' -57.3 NC_001847.1 + 64327 0.67 0.787159
Target:  5'- gGGGaCUCGgcgcucgGCggAUCCCCUCCCg -3'
miRNA:   3'- gUCC-GAGUaaa----CGgaUGGGGGAGGGg -5'
6510 5' -57.3 NC_001847.1 + 66174 0.69 0.648858
Target:  5'- cCGGGCUgGcgccgGCC-GCCCCCUCUUCc -3'
miRNA:   3'- -GUCCGAgUaaa--CGGaUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 67068 0.69 0.642699
Target:  5'- aGGGUUCAg-UGCCgGCUccagcuuccccuucuCCCUCCCCu -3'
miRNA:   3'- gUCCGAGUaaACGGaUGG---------------GGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 68131 0.73 0.423396
Target:  5'- gCGGGCgagCGcgcGUCUGCCCCUUCUCCg -3'
miRNA:   3'- -GUCCGa--GUaaaCGGAUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 73814 0.66 0.822725
Target:  5'- uGGGCUaggcgcGCCcGCCCCg-CCCCg -3'
miRNA:   3'- gUCCGAguaaa-CGGaUGGGGgaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 75954 0.68 0.71987
Target:  5'- -cGGCUCGg--GCUacgacgGCCCCCUCgaCCg -3'
miRNA:   3'- guCCGAGUaaaCGGa-----UGGGGGAGg-GG- -5'
6510 5' -57.3 NC_001847.1 + 78307 0.8 0.177938
Target:  5'- uCGGGCggcuggGCC-GCCCCCUCCCCg -3'
miRNA:   3'- -GUCCGaguaaaCGGaUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 80696 0.68 0.728797
Target:  5'- uCGGGCUCGUcc-CCgcCCCCCUCgucucugCCCg -3'
miRNA:   3'- -GUCCGAGUAaacGGauGGGGGAG-------GGG- -5'
6510 5' -57.3 NC_001847.1 + 82106 0.69 0.628318
Target:  5'- aGGGCgccugCGUUUgcGCCUGCCgCCCgacgCCCg -3'
miRNA:   3'- gUCCGa----GUAAA--CGGAUGG-GGGa---GGGg -5'
6510 5' -57.3 NC_001847.1 + 82151 0.74 0.39731
Target:  5'- -cGGCUCcgccaUGCCUGcgcguCCCCCUUCCCc -3'
miRNA:   3'- guCCGAGuaa--ACGGAU-----GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 82557 0.66 0.831201
Target:  5'- gCGGGCUCg---GCCUcgGCCgCCgCCUCg -3'
miRNA:   3'- -GUCCGAGuaaaCGGA--UGGgGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 87131 0.7 0.587335
Target:  5'- -cGGCUCGgg-GgCUACCUcugcgacaacuuCCUCCCCg -3'
miRNA:   3'- guCCGAGUaaaCgGAUGGG------------GGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 88350 0.69 0.669344
Target:  5'- --uGCUCGUcUGCCguaGCCCUCcCCCCc -3'
miRNA:   3'- gucCGAGUAaACGGa--UGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 90035 0.73 0.40589
Target:  5'- --cGCUCugUUGUCUGCCCCCaCCCCc -3'
miRNA:   3'- gucCGAGuaAACGGAUGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 91649 0.67 0.768499
Target:  5'- -cGGCUC--UUGCUUcGCCCUCUCUCg -3'
miRNA:   3'- guCCGAGuaAACGGA-UGGGGGAGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.