miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 5' -57.3 NC_001847.1 + 108905 1.12 0.001118
Target:  5'- cCAGGCUCAUUUGCCUACCCCCUCCCCa -3'
miRNA:   3'- -GUCCGAGUAAACGGAUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 113559 0.71 0.56701
Target:  5'- gGGGCggg---GCCccgcgGCCCCCUCuCCCg -3'
miRNA:   3'- gUCCGaguaaaCGGa----UGGGGGAG-GGG- -5'
6510 5' -57.3 NC_001847.1 + 15912 0.7 0.577153
Target:  5'- -cGGCccCA--UGCCUGCCCCgCcgCCCCg -3'
miRNA:   3'- guCCGa-GUaaACGGAUGGGG-Ga-GGGG- -5'
6510 5' -57.3 NC_001847.1 + 16031 0.7 0.577153
Target:  5'- -cGGCccCA--UGCCUGCCCCgCcgCCCCg -3'
miRNA:   3'- guCCGa-GUaaACGGAUGGGG-Ga-GGGG- -5'
6510 5' -57.3 NC_001847.1 + 112344 0.69 0.679546
Target:  5'- cCAGGUUCc----CCUcGCCCCCcaUCCCCa -3'
miRNA:   3'- -GUCCGAGuaaacGGA-UGGGGG--AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 99835 0.69 0.679546
Target:  5'- uUAGuGCUUugcgUUGCCcGCCCCCgCCCa -3'
miRNA:   3'- -GUC-CGAGua--AACGGaUGGGGGaGGGg -5'
6510 5' -57.3 NC_001847.1 + 104766 0.69 0.678527
Target:  5'- cCGGcGCUCGUccucGCCgggcgGCCCgccagcgCCUCCCCg -3'
miRNA:   3'- -GUC-CGAGUAaa--CGGa----UGGG-------GGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 88350 0.69 0.669344
Target:  5'- --uGCUCGUcUGCCguaGCCCUCcCCCCc -3'
miRNA:   3'- gucCGAGUAaACGGa--UGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 124783 0.69 0.669344
Target:  5'- gGGGCUUucg-GCggcgGCCCCCUCgCCg -3'
miRNA:   3'- gUCCGAGuaaaCGga--UGGGGGAGgGG- -5'
6510 5' -57.3 NC_001847.1 + 108668 0.69 0.659112
Target:  5'- cCAGGCcCGcc--CCUACcaguuCCCCUCCCCa -3'
miRNA:   3'- -GUCCGaGUaaacGGAUG-----GGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 124267 0.69 0.648858
Target:  5'- -cGGCUCcc---CCUuCCCCCUCCCg -3'
miRNA:   3'- guCCGAGuaaacGGAuGGGGGAGGGg -5'
6510 5' -57.3 NC_001847.1 + 39773 0.7 0.60779
Target:  5'- uCGGGCaugUAUguugcGCCgccugGCCCCgCUCCCCu -3'
miRNA:   3'- -GUCCGa--GUAaa---CGGa----UGGGG-GAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 107897 0.7 0.60779
Target:  5'- gCGGGCggCAgugcggcGCCUucuccuuCCCCUUCCCCu -3'
miRNA:   3'- -GUCCGa-GUaaa----CGGAu------GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 82106 0.69 0.628318
Target:  5'- aGGGCgccugCGUUUgcGCCUGCCgCCCgacgCCCg -3'
miRNA:   3'- gUCCGa----GUAAA--CGGAUGG-GGGa---GGGg -5'
6510 5' -57.3 NC_001847.1 + 120907 0.69 0.63859
Target:  5'- gCGGGCUCGgc-GUUUGCCCUCaccacgCCCCc -3'
miRNA:   3'- -GUCCGAGUaaaCGGAUGGGGGa-----GGGG- -5'
6510 5' -57.3 NC_001847.1 + 67068 0.69 0.642699
Target:  5'- aGGGUUCAg-UGCCgGCUccagcuuccccuucuCCCUCCCCu -3'
miRNA:   3'- gUCCGAGUaaACGGaUGG---------------GGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 6092 1.12 0.001118
Target:  5'- cCAGGCUCAUUUGCCUACCCCCUCCCCa -3'
miRNA:   3'- -GUCCGAGUAAACGGAUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 41263 0.66 0.839494
Target:  5'- gCAGGUgcuUUUGCCcgaGCCCgCguUCCCCg -3'
miRNA:   3'- -GUCCGaguAAACGGa--UGGGgG--AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 7553 0.66 0.831201
Target:  5'- ---cCUUuugUGCCcccCCCCCUCCCCu -3'
miRNA:   3'- guccGAGuaaACGGau-GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 82557 0.66 0.831201
Target:  5'- gCGGGCUCg---GCCUcgGCCgCCgCCUCg -3'
miRNA:   3'- -GUCCGAGuaaaCGGA--UGGgGGaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.