miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 3' -48.4 NC_001847.1 + 116675 0.67 0.995984
Target:  5'- --cUGCGUGugGGUccGGCgcugCGGGCGCg -3'
miRNA:   3'- uaaACGUACuuUCGuaCCG----GCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 124700 0.67 0.995984
Target:  5'- ---cGCGgccagGGGAGCcgGGCgCGGGgGCg -3'
miRNA:   3'- uaaaCGUa----CUUUCGuaCCG-GCUUgCG- -5'
6511 3' -48.4 NC_001847.1 + 33218 0.67 0.995984
Target:  5'- ----aCGUGAuGGCGaugcUGGCCGAGUGCg -3'
miRNA:   3'- uaaacGUACUuUCGU----ACCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 73412 0.67 0.995984
Target:  5'- -gUUGCAgGAucGGCugauuGCCGAGCGCc -3'
miRNA:   3'- uaAACGUaCUu-UCGuac--CGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 15454 0.67 0.995984
Target:  5'- --cUGC-UGaAAAGCGUGGCgGcgcacGGCGCg -3'
miRNA:   3'- uaaACGuAC-UUUCGUACCGgC-----UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 87353 0.67 0.995984
Target:  5'- ---gGCc-GAGGGCcUGGCCGAGCa- -3'
miRNA:   3'- uaaaCGuaCUUUCGuACCGGCUUGcg -5'
6511 3' -48.4 NC_001847.1 + 33708 0.67 0.99578
Target:  5'- ---cGCGgcggcGCGUGGCCGAgcugggggagcgacGCGCa -3'
miRNA:   3'- uaaaCGUacuuuCGUACCGGCU--------------UGCG- -5'
6511 3' -48.4 NC_001847.1 + 95146 0.67 0.995271
Target:  5'- --cUGCGcuUGGGggugccGGCAUGGCgGGggGCGCg -3'
miRNA:   3'- uaaACGU--ACUU------UCGUACCGgCU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 109345 0.67 0.995271
Target:  5'- ---cGCGgcGGAGCAgcucgaGGCCGAgcACGCg -3'
miRNA:   3'- uaaaCGUacUUUCGUa-----CCGGCU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 61889 0.67 0.995271
Target:  5'- ---gGCGUGcgcGCAcGGCCucGAGCGCg -3'
miRNA:   3'- uaaaCGUACuuuCGUaCCGG--CUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 116061 0.67 0.995271
Target:  5'- ---aGCGggagcGAAAGCggGGCCGAcgACGg -3'
miRNA:   3'- uaaaCGUa----CUUUCGuaCCGGCU--UGCg -5'
6511 3' -48.4 NC_001847.1 + 40439 0.67 0.994795
Target:  5'- -gUUGUuaAUGAAGGCGucUGGCaCGAcaaacuuguccacgaGCGCg -3'
miRNA:   3'- uaAACG--UACUUUCGU--ACCG-GCU---------------UGCG- -5'
6511 3' -48.4 NC_001847.1 + 85367 0.67 0.994458
Target:  5'- ---gGCGUGGcAAGCGUcGCC-AGCGCg -3'
miRNA:   3'- uaaaCGUACU-UUCGUAcCGGcUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 48460 0.67 0.994458
Target:  5'- ---gGCGUGAAGGUGaGGCaaaAGCGCg -3'
miRNA:   3'- uaaaCGUACUUUCGUaCCGgc-UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 95649 0.67 0.994458
Target:  5'- ---gGCGcgGggGGCGgcgcgGGCCGcucuGGCGCg -3'
miRNA:   3'- uaaaCGUa-CuuUCGUa----CCGGC----UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 95703 0.67 0.994458
Target:  5'- ---gGCGcgGggGGCGgcgcgGGCCGcucuGGCGCg -3'
miRNA:   3'- uaaaCGUa-CuuUCGUa----CCGGC----UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 95757 0.67 0.994458
Target:  5'- ---gGCGcgGggGGCGgcgcgGGCCGcucuGGCGCg -3'
miRNA:   3'- uaaaCGUa-CuuUCGUa----CCGGC----UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 66730 0.67 0.994458
Target:  5'- --gUGCcgGuuGGCGacccuuaccUGGCCGAGUGCu -3'
miRNA:   3'- uaaACGuaCuuUCGU---------ACCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 102443 0.67 0.994458
Target:  5'- -cUUGCAcagcGGGCA-GGUCGGGCGCc -3'
miRNA:   3'- uaAACGUacu-UUCGUaCCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 57122 0.67 0.994371
Target:  5'- ---cGCAUGuuGGgggacgcCAUGGCCGuGACGUa -3'
miRNA:   3'- uaaaCGUACuuUC-------GUACCGGC-UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.