miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 3' -48.4 NC_001847.1 + 51838 0.66 0.997614
Target:  5'- ---cGCcgGGcaaCGUGGCCGAgcugGCGCa -3'
miRNA:   3'- uaaaCGuaCUuucGUACCGGCU----UGCG- -5'
6511 3' -48.4 NC_001847.1 + 41159 0.66 0.997147
Target:  5'- ---cGCgaGUGAgcGCGcGGCgCGGGCGCg -3'
miRNA:   3'- uaaaCG--UACUuuCGUaCCG-GCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 82024 0.66 0.997147
Target:  5'- ---cGCA-GucGGCGcUGGCCG-ACGCg -3'
miRNA:   3'- uaaaCGUaCuuUCGU-ACCGGCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 4564 0.66 0.997147
Target:  5'- ---gGCGUGGAAGUggaaGUGGUgCGGGuCGCg -3'
miRNA:   3'- uaaaCGUACUUUCG----UACCG-GCUU-GCG- -5'
6511 3' -48.4 NC_001847.1 + 15585 0.66 0.997147
Target:  5'- --cUGCccGcAGAGUcUGGCCGcGCGCc -3'
miRNA:   3'- uaaACGuaC-UUUCGuACCGGCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 112124 0.66 0.997147
Target:  5'- ---cGCGUGGccgcggcaGAGUcgGUGGCCGAaaaguACGUg -3'
miRNA:   3'- uaaaCGUACU--------UUCG--UACCGGCU-----UGCG- -5'
6511 3' -48.4 NC_001847.1 + 95319 0.66 0.997147
Target:  5'- ---cGCGgcgccGGCAgGGCCGAagGCGCa -3'
miRNA:   3'- uaaaCGUacuu-UCGUaCCGGCU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 94158 0.66 0.997147
Target:  5'- ---aGCAgguGAGCGcGGCCcGGCGCa -3'
miRNA:   3'- uaaaCGUacuUUCGUaCCGGcUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 89664 0.66 0.997096
Target:  5'- cGUUUGCuaaucucGGaCAUGGCCGAggacccgggguauGCGCg -3'
miRNA:   3'- -UAAACGuacuu--UC-GUACCGGCU-------------UGCG- -5'
6511 3' -48.4 NC_001847.1 + 119778 0.66 0.996993
Target:  5'- ---cGCcccGAAGGC-UGGCCGAgccucgaagccaucACGCa -3'
miRNA:   3'- uaaaCGua-CUUUCGuACCGGCU--------------UGCG- -5'
6511 3' -48.4 NC_001847.1 + 28491 0.66 0.996606
Target:  5'- --cUGC-UGAcgccuucuggcgAGGCGUGGCCcGGcaGCGCg -3'
miRNA:   3'- uaaACGuACU------------UUCGUACCGG-CU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 77802 0.66 0.996606
Target:  5'- --aUGUcUGGAGGaCGUGGCgCG-GCGCg -3'
miRNA:   3'- uaaACGuACUUUC-GUACCG-GCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 60131 0.66 0.996606
Target:  5'- ---aGCGaGggGGCGUcGGCgccgaaGAACGCg -3'
miRNA:   3'- uaaaCGUaCuuUCGUA-CCGg-----CUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 29722 0.66 0.996606
Target:  5'- --cUGCGgcgcGGGAGCgGUGGCC-AACGUa -3'
miRNA:   3'- uaaACGUa---CUUUCG-UACCGGcUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 18766 0.66 0.996606
Target:  5'- ---cGCGgcuAAGGCGgcGGCCGAcaGCGCg -3'
miRNA:   3'- uaaaCGUac-UUUCGUa-CCGGCU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 42167 0.66 0.996606
Target:  5'- -gUUGCcgGcgGGUGcUGGCgGAAUGCg -3'
miRNA:   3'- uaAACGuaCuuUCGU-ACCGgCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 131304 0.66 0.996606
Target:  5'- --cUGC-UGAcgccuucuggcgAGGCGUGGCCcGGcaGCGCg -3'
miRNA:   3'- uaaACGuACU------------UUCGUACCGG-CU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 77540 0.66 0.996548
Target:  5'- ---aGCGcGAGGGCGUGGCgcacccuCGuGCGCu -3'
miRNA:   3'- uaaaCGUaCUUUCGUACCG-------GCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 134147 0.66 0.996367
Target:  5'- ---aGCugGUGggGGCAgaaggugcgugcgGGCCG-GCGCa -3'
miRNA:   3'- uaaaCG--UACuuUCGUa------------CCGGCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 87353 0.67 0.995984
Target:  5'- ---gGCc-GAGGGCcUGGCCGAGCa- -3'
miRNA:   3'- uaaaCGuaCUUUCGuACCGGCUUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.