miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 3' -48.4 NC_001847.1 + 56603 0.72 0.907199
Target:  5'- --cUGCGUGAucgaagaggccgAGGCcgcGGUCGAGCGCg -3'
miRNA:   3'- uaaACGUACU------------UUCGua-CCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 102503 0.72 0.907199
Target:  5'- ---gGCGUGcAGGCAgGGCaGAGCGCg -3'
miRNA:   3'- uaaaCGUACuUUCGUaCCGgCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 132742 0.72 0.913695
Target:  5'- ---cGCAgc-GAGCcacGGCCGAGCGCg -3'
miRNA:   3'- uaaaCGUacuUUCGua-CCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 77668 0.72 0.919913
Target:  5'- ---gGCGccGAGGUAcugcUGGCCGAGCGCu -3'
miRNA:   3'- uaaaCGUacUUUCGU----ACCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 106341 0.72 0.925272
Target:  5'- --cUGCGUGAAcggcgacGGCGUcccGGCCGAGCa- -3'
miRNA:   3'- uaaACGUACUU-------UCGUA---CCGGCUUGcg -5'
6511 3' -48.4 NC_001847.1 + 31707 0.72 0.925854
Target:  5'- ---gGCGgggGGAGGCGcgGGCCGcGCGCc -3'
miRNA:   3'- uaaaCGUa--CUUUCGUa-CCGGCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 25449 0.72 0.925854
Target:  5'- ---aGCGccGAcuGCA-GGCCGAGCGCg -3'
miRNA:   3'- uaaaCGUa-CUuuCGUaCCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 89051 0.72 0.925854
Target:  5'- ---cGC--GGAAGCG-GGCCGGGCGCc -3'
miRNA:   3'- uaaaCGuaCUUUCGUaCCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 96993 0.72 0.925854
Target:  5'- --gUGCGUGaAGAGCG-GGUCGGcgGCGCu -3'
miRNA:   3'- uaaACGUAC-UUUCGUaCCGGCU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 134520 0.72 0.925854
Target:  5'- ---gGCGgggGGAGGCGcgGGCCGcGCGCc -3'
miRNA:   3'- uaaaCGUa--CUUUCGUa-CCGGCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 100152 0.72 0.931515
Target:  5'- ---gGCcgGGAAGag-GGCCGAcaGCGCg -3'
miRNA:   3'- uaaaCGuaCUUUCguaCCGGCU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 120838 0.72 0.931515
Target:  5'- ---aGCAgcGGGAGCggGGCCGcGACGCc -3'
miRNA:   3'- uaaaCGUa-CUUUCGuaCCGGC-UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 1662 0.71 0.936896
Target:  5'- --cUGCccGAcGGCcgGGCCGucGCGCg -3'
miRNA:   3'- uaaACGuaCUuUCGuaCCGGCu-UGCG- -5'
6511 3' -48.4 NC_001847.1 + 69602 0.71 0.936896
Target:  5'- ---cGCGUGAGuauaaaacgagcGGCGcGGCCGGGCGg -3'
miRNA:   3'- uaaaCGUACUU------------UCGUaCCGGCUUGCg -5'
6511 3' -48.4 NC_001847.1 + 104475 0.71 0.936896
Target:  5'- --cUGCccGAcGGCcgGGCCGucGCGCg -3'
miRNA:   3'- uaaACGuaCUuUCGuaCCGGCu-UGCG- -5'
6511 3' -48.4 NC_001847.1 + 116983 0.71 0.936896
Target:  5'- ---cGC-UGGggcGAGCGUGGCUGAuCGCa -3'
miRNA:   3'- uaaaCGuACU---UUCGUACCGGCUuGCG- -5'
6511 3' -48.4 NC_001847.1 + 14291 0.71 0.942001
Target:  5'- ---cGCGgcGAAauGGCGUGGCCGGcCGCc -3'
miRNA:   3'- uaaaCGUa-CUU--UCGUACCGGCUuGCG- -5'
6511 3' -48.4 NC_001847.1 + 46496 0.71 0.942001
Target:  5'- ---cGC-----AGCGUGGCCGAGCGUu -3'
miRNA:   3'- uaaaCGuacuuUCGUACCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 87907 0.71 0.942001
Target:  5'- cUUUGCAcagGGgcgGGGCGUggGGCUGGGCGCg -3'
miRNA:   3'- uAAACGUa--CU---UUCGUA--CCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 86529 0.71 0.942001
Target:  5'- ---gGCGUucacaucGGCAcGGCCGAGCGCg -3'
miRNA:   3'- uaaaCGUAcuu----UCGUaCCGGCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.