miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 3' -48.4 NC_001847.1 + 108608 1.1 0.009936
Target:  5'- cAUUUGCAUGAAAGCAUGGCCGAACGCc -3'
miRNA:   3'- -UAAACGUACUUUCGUACCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 5795 1.1 0.009936
Target:  5'- cAUUUGCAUGAAAGCAUGGCCGAACGCc -3'
miRNA:   3'- -UAAACGUACUUUCGUACCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 52868 0.83 0.383079
Target:  5'- ---aGCA---AGGCGUGGCCGAGCGCg -3'
miRNA:   3'- uaaaCGUacuUUCGUACCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 72350 0.82 0.46907
Target:  5'- --cUGCA-GGAAGCcgugaccaacAUGGCCGAGCGCa -3'
miRNA:   3'- uaaACGUaCUUUCG----------UACCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 109478 0.8 0.53154
Target:  5'- ---cGCAUGAGAGCGcagucgcgGGCCGAcgaACGCg -3'
miRNA:   3'- uaaaCGUACUUUCGUa-------CCGGCU---UGCG- -5'
6511 3' -48.4 NC_001847.1 + 57664 0.77 0.717559
Target:  5'- ---gGCcgGcgGGCcgGGCCGGGCGCc -3'
miRNA:   3'- uaaaCGuaCuuUCGuaCCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 44232 0.77 0.728252
Target:  5'- cUUUGgGUGcgGGCGUggGGCUGAGCGCg -3'
miRNA:   3'- uAAACgUACuuUCGUA--CCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 72992 0.75 0.809328
Target:  5'- ---cGCGcGGGAGC-UGGCCGcAGCGCg -3'
miRNA:   3'- uaaaCGUaCUUUCGuACCGGC-UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 106926 0.75 0.809328
Target:  5'- --cUGCAUGuucaCcgGGCCGAACGCc -3'
miRNA:   3'- uaaACGUACuuucGuaCCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 74596 0.75 0.809328
Target:  5'- --cUGCAgGAcGGCGUGGCC-AACGCc -3'
miRNA:   3'- uaaACGUaCUuUCGUACCGGcUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 117444 0.74 0.836941
Target:  5'- --gUGCAcUGc-GGCGUGGCCGAcaACGCc -3'
miRNA:   3'- uaaACGU-ACuuUCGUACCGGCU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 3971 0.74 0.845723
Target:  5'- ---gGCGgcGAGGGCGccgggGGCCGGGCGCg -3'
miRNA:   3'- uaaaCGUa-CUUUCGUa----CCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 19724 0.74 0.8626
Target:  5'- ---cGCGac-GAGguUGGCCGGACGCg -3'
miRNA:   3'- uaaaCGUacuUUCguACCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 1537 0.74 0.8626
Target:  5'- ---cGCGcGAAGGCGcccgGGCCGAagACGCg -3'
miRNA:   3'- uaaaCGUaCUUUCGUa---CCGGCU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 52545 0.74 0.8626
Target:  5'- ---cGCcgGAGGGCGcGGCCGAcAUGCu -3'
miRNA:   3'- uaaaCGuaCUUUCGUaCCGGCU-UGCG- -5'
6511 3' -48.4 NC_001847.1 + 104350 0.74 0.8626
Target:  5'- ---cGCGcGAAGGCGcccgGGCCGAagACGCg -3'
miRNA:   3'- uaaaCGUaCUUUCGUa---CCGGCU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 35918 0.73 0.900428
Target:  5'- ---cGCGUGGGAGCcuuuGUGGCgGcGCGCc -3'
miRNA:   3'- uaaaCGUACUUUCG----UACCGgCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 22610 0.72 0.907199
Target:  5'- ---cGCGUGGcAAGCgaGUGGCCGcgcagGGCGCg -3'
miRNA:   3'- uaaaCGUACU-UUCG--UACCGGC-----UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 125423 0.72 0.907199
Target:  5'- ---cGCGUGGcAAGCgaGUGGCCGcgcagGGCGCg -3'
miRNA:   3'- uaaaCGUACU-UUCG--UACCGGC-----UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 102503 0.72 0.907199
Target:  5'- ---gGCGUGcAGGCAgGGCaGAGCGCg -3'
miRNA:   3'- uaaaCGUACuUUCGUaCCGgCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.