Results 1 - 20 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6511 | 3' | -48.4 | NC_001847.1 | + | 51838 | 0.66 | 0.997614 |
Target: 5'- ---cGCcgGGcaaCGUGGCCGAgcugGCGCa -3' miRNA: 3'- uaaaCGuaCUuucGUACCGGCU----UGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 124431 | 0.66 | 0.998359 |
Target: 5'- ---cGC-UGgcGGCGcuUGGCCG-GCGCg -3' miRNA: 3'- uaaaCGuACuuUCGU--ACCGGCuUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 10130 | 0.66 | 0.998359 |
Target: 5'- ---gGCGaGcgGGCccGGCCGuAGCGCg -3' miRNA: 3'- uaaaCGUaCuuUCGuaCCGGC-UUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 82024 | 0.66 | 0.997147 |
Target: 5'- ---cGCA-GucGGCGcUGGCCG-ACGCg -3' miRNA: 3'- uaaaCGUaCuuUCGU-ACCGGCuUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 85765 | 0.66 | 0.998359 |
Target: 5'- ---gGCAacgccGggGGCAgcGGCCGAugcgguGCGCg -3' miRNA: 3'- uaaaCGUa----CuuUCGUa-CCGGCU------UGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 131304 | 0.66 | 0.996606 |
Target: 5'- --cUGC-UGAcgccuucuggcgAGGCGUGGCCcGGcaGCGCg -3' miRNA: 3'- uaaACGuACU------------UUCGUACCGG-CU--UGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 77802 | 0.66 | 0.996606 |
Target: 5'- --aUGUcUGGAGGaCGUGGCgCG-GCGCg -3' miRNA: 3'- uaaACGuACUUUC-GUACCG-GCuUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 41159 | 0.66 | 0.997147 |
Target: 5'- ---cGCgaGUGAgcGCGcGGCgCGGGCGCg -3' miRNA: 3'- uaaaCG--UACUuuCGUaCCG-GCUUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 19758 | 0.66 | 0.998359 |
Target: 5'- ---aGCggGAAGGCGgggugcgGGCUcGGCGCa -3' miRNA: 3'- uaaaCGuaCUUUCGUa------CCGGcUUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 18766 | 0.66 | 0.996606 |
Target: 5'- ---cGCGgcuAAGGCGgcGGCCGAcaGCGCg -3' miRNA: 3'- uaaaCGUac-UUUCGUa-CCGGCU--UGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 38089 | 0.66 | 0.998359 |
Target: 5'- ---cGCGgucgggGAAAGCAgc-CCGGACGCc -3' miRNA: 3'- uaaaCGUa-----CUUUCGUaccGGCUUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 119778 | 0.66 | 0.996993 |
Target: 5'- ---cGCcccGAAGGC-UGGCCGAgccucgaagccaucACGCa -3' miRNA: 3'- uaaaCGua-CUUUCGuACCGGCU--------------UGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 60131 | 0.66 | 0.996606 |
Target: 5'- ---aGCGaGggGGCGUcGGCgccgaaGAACGCg -3' miRNA: 3'- uaaaCGUaCuuUCGUA-CCGg-----CUUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 15585 | 0.66 | 0.997147 |
Target: 5'- --cUGCccGcAGAGUcUGGCCGcGCGCc -3' miRNA: 3'- uaaACGuaC-UUUCGuACCGGCuUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 5987 | 0.66 | 0.997614 |
Target: 5'- cUUUGCG-GggGGCA--GCCGAACa- -3' miRNA: 3'- uAAACGUaCuuUCGUacCGGCUUGcg -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 4564 | 0.66 | 0.997147 |
Target: 5'- ---gGCGUGGAAGUggaaGUGGUgCGGGuCGCg -3' miRNA: 3'- uaaaCGUACUUUCG----UACCG-GCUU-GCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 48839 | 0.66 | 0.998359 |
Target: 5'- ---cGCGcGggGGCGccucGGCCGcgcGGCGCg -3' miRNA: 3'- uaaaCGUaCuuUCGUa---CCGGC---UUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 77540 | 0.66 | 0.996548 |
Target: 5'- ---aGCGcGAGGGCGUGGCgcacccuCGuGCGCu -3' miRNA: 3'- uaaaCGUaCUUUCGUACCG-------GCuUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 29722 | 0.66 | 0.996606 |
Target: 5'- --cUGCGgcgcGGGAGCgGUGGCC-AACGUa -3' miRNA: 3'- uaaACGUa---CUUUCG-UACCGGcUUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 18019 | 0.66 | 0.998016 |
Target: 5'- ---gGCGUgGggGGCGUuGcGCCGGugGUc -3' miRNA: 3'- uaaaCGUA-CuuUCGUA-C-CGGCUugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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