miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 3' -48.4 NC_001847.1 + 1537 0.74 0.8626
Target:  5'- ---cGCGcGAAGGCGcccgGGCCGAagACGCg -3'
miRNA:   3'- uaaaCGUaCUUUCGUa---CCGGCU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 1662 0.71 0.936896
Target:  5'- --cUGCccGAcGGCcgGGCCGucGCGCg -3'
miRNA:   3'- uaaACGuaCUuUCGuaCCGGCu-UGCG- -5'
6511 3' -48.4 NC_001847.1 + 1789 0.71 0.953131
Target:  5'- ---cGCGUcGAGAGCAgcagcacgcccugcGcGCCGAGCGCg -3'
miRNA:   3'- uaaaCGUA-CUUUCGUa-------------C-CGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 2875 0.67 0.993536
Target:  5'- ---gGCGUcGucGUcgGGCCGggUGCg -3'
miRNA:   3'- uaaaCGUAcUuuCGuaCCGGCuuGCG- -5'
6511 3' -48.4 NC_001847.1 + 3971 0.74 0.845723
Target:  5'- ---gGCGgcGAGGGCGccgggGGCCGGGCGCg -3'
miRNA:   3'- uaaaCGUa-CUUUCGUa----CCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 4564 0.66 0.997147
Target:  5'- ---gGCGUGGAAGUggaaGUGGUgCGGGuCGCg -3'
miRNA:   3'- uaaaCGUACUUUCG----UACCG-GCUU-GCG- -5'
6511 3' -48.4 NC_001847.1 + 4796 0.7 0.973262
Target:  5'- ---aGCAUGAcGGCAUG-CUGGACGa -3'
miRNA:   3'- uaaaCGUACUuUCGUACcGGCUUGCg -5'
6511 3' -48.4 NC_001847.1 + 5795 1.1 0.009936
Target:  5'- cAUUUGCAUGAAAGCAUGGCCGAACGCc -3'
miRNA:   3'- -UAAACGUACUUUCGUACCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 5987 0.66 0.997614
Target:  5'- cUUUGCG-GggGGCA--GCCGAACa- -3'
miRNA:   3'- uAAACGUaCuuUCGUacCGGCUUGcg -5'
6511 3' -48.4 NC_001847.1 + 6695 0.69 0.978638
Target:  5'- ---gGCcgGGcgcgcgcGCAgGGCCGAGCGCa -3'
miRNA:   3'- uaaaCGuaCUuu-----CGUaCCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 7666 0.68 0.989157
Target:  5'- ---gGCGgccGAAAGCAacauuguaaUGGCCGAcguugcggugcuggaGCGCg -3'
miRNA:   3'- uaaaCGUa--CUUUCGU---------ACCGGCU---------------UGCG- -5'
6511 3' -48.4 NC_001847.1 + 7721 0.67 0.992495
Target:  5'- ---gGCAUucAGGCGcagGGCgCGGGCGCg -3'
miRNA:   3'- uaaaCGUAcuUUCGUa--CCG-GCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 10130 0.66 0.998359
Target:  5'- ---gGCGaGcgGGCccGGCCGuAGCGCg -3'
miRNA:   3'- uaaaCGUaCuuUCGuaCCGGC-UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 10849 0.69 0.978638
Target:  5'- ---gGCGgc---GCGUGGCCGAgGCGCg -3'
miRNA:   3'- uaaaCGUacuuuCGUACCGGCU-UGCG- -5'
6511 3' -48.4 NC_001847.1 + 12835 0.69 0.97606
Target:  5'- ---cGCuUGGGAG-AUGGCCGGuACGCc -3'
miRNA:   3'- uaaaCGuACUUUCgUACCGGCU-UGCG- -5'
6511 3' -48.4 NC_001847.1 + 14028 0.67 0.992495
Target:  5'- ---aGCAUaGAGGCGcUGGUCGGcCGCg -3'
miRNA:   3'- uaaaCGUAcUUUCGU-ACCGGCUuGCG- -5'
6511 3' -48.4 NC_001847.1 + 14291 0.71 0.942001
Target:  5'- ---cGCGgcGAAauGGCGUGGCCGGcCGCc -3'
miRNA:   3'- uaaaCGUa-CUU--UCGUACCGGCUuGCG- -5'
6511 3' -48.4 NC_001847.1 + 14661 0.68 0.989875
Target:  5'- --cUGaCGUGAAcaucgacGGCGcGGCCGGcgGCGCg -3'
miRNA:   3'- uaaAC-GUACUU-------UCGUaCCGGCU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 15454 0.67 0.995984
Target:  5'- --cUGC-UGaAAAGCGUGGCgGcgcacGGCGCg -3'
miRNA:   3'- uaaACGuAC-UUUCGUACCGgC-----UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 15585 0.66 0.997147
Target:  5'- --cUGCccGcAGAGUcUGGCCGcGCGCc -3'
miRNA:   3'- uaaACGuaC-UUUCGuACCGGCuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.