miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 3' -48.4 NC_001847.1 + 135000 0.66 0.997614
Target:  5'- ---aGUuUGGAAGCAagaUGGCC--GCGCa -3'
miRNA:   3'- uaaaCGuACUUUCGU---ACCGGcuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 134825 0.67 0.992495
Target:  5'- ---gGCGUGGAgcgcgaAGCuccGGCgGGGCGCg -3'
miRNA:   3'- uaaaCGUACUU------UCGua-CCGgCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 134634 0.69 0.981004
Target:  5'- cGUggGC-UGggGGCG-GGCCGGcagcagGCGCg -3'
miRNA:   3'- -UAaaCGuACuuUCGUaCCGGCU------UGCG- -5'
6511 3' -48.4 NC_001847.1 + 134520 0.72 0.925854
Target:  5'- ---gGCGgggGGAGGCGcgGGCCGcGCGCc -3'
miRNA:   3'- uaaaCGUa--CUUUCGUa-CCGGCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 134198 0.72 0.907199
Target:  5'- ---aGCGUGGAgcGGCGcgcgcgGGCCGAGgGCg -3'
miRNA:   3'- uaaaCGUACUU--UCGUa-----CCGGCUUgCG- -5'
6511 3' -48.4 NC_001847.1 + 134147 0.66 0.996367
Target:  5'- ---aGCugGUGggGGCAgaaggugcgugcgGGCCG-GCGCa -3'
miRNA:   3'- uaaaCG--UACuuUCGUa------------CCGGCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 132742 0.72 0.913695
Target:  5'- ---cGCAgc-GAGCcacGGCCGAGCGCg -3'
miRNA:   3'- uaaaCGUacuUUCGua-CCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 131418 0.69 0.983169
Target:  5'- ---cGCGUGcgcGcCGUGGCCGGcgcGCGCg -3'
miRNA:   3'- uaaaCGUACuuuC-GUACCGGCU---UGCG- -5'
6511 3' -48.4 NC_001847.1 + 131304 0.66 0.996606
Target:  5'- --cUGC-UGAcgccuucuggcgAGGCGUGGCCcGGcaGCGCg -3'
miRNA:   3'- uaaACGuACU------------UUCGUACCGG-CU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 131136 0.66 0.998359
Target:  5'- --cUGCucgGggGGCGgacuguuaacuUGGCCGcgcuGGCGCu -3'
miRNA:   3'- uaaACGua-CuuUCGU-----------ACCGGC----UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 129687 0.7 0.973262
Target:  5'- ---cGCA-GAGAGC--GGCCgGGACGCg -3'
miRNA:   3'- uaaaCGUaCUUUCGuaCCGG-CUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 125820 0.68 0.986934
Target:  5'- --gUGCAgcucAAAGCGggucgGGCCGAGUGCg -3'
miRNA:   3'- uaaACGUac--UUUCGUa----CCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 125711 0.71 0.946829
Target:  5'- --cUGCA--AGAGCAUGGCUGGGCu- -3'
miRNA:   3'- uaaACGUacUUUCGUACCGGCUUGcg -5'
6511 3' -48.4 NC_001847.1 + 125423 0.72 0.907199
Target:  5'- ---cGCGUGGcAAGCgaGUGGCCGcgcagGGCGCg -3'
miRNA:   3'- uaaaCGUACU-UUCG--UACCGGC-----UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 124700 0.67 0.995984
Target:  5'- ---cGCGgccagGGGAGCcgGGCgCGGGgGCg -3'
miRNA:   3'- uaaaCGUa----CUUUCGuaCCG-GCUUgCG- -5'
6511 3' -48.4 NC_001847.1 + 124588 0.7 0.973262
Target:  5'- ---cGCcgGGcccGGCGccGGCCGGGCGCg -3'
miRNA:   3'- uaaaCGuaCUu--UCGUa-CCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 124431 0.66 0.998359
Target:  5'- ---cGC-UGgcGGCGcuUGGCCG-GCGCg -3'
miRNA:   3'- uaaaCGuACuuUCGU--ACCGGCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 123044 0.68 0.988554
Target:  5'- ---cGC-UGGAAGUAcGGCCGcgGGCGCc -3'
miRNA:   3'- uaaaCGuACUUUCGUaCCGGC--UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 121974 0.69 0.983169
Target:  5'- ---gGCGUGAAcuGCGUGGCUGccaGCa -3'
miRNA:   3'- uaaaCGUACUUu-CGUACCGGCuugCG- -5'
6511 3' -48.4 NC_001847.1 + 120919 0.69 0.981004
Target:  5'- ---gGCAUacGAGGGCG-GGgCGGGCGCg -3'
miRNA:   3'- uaaaCGUA--CUUUCGUaCCgGCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.