miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 3' -48.4 NC_001847.1 + 18019 0.66 0.998016
Target:  5'- ---gGCGUgGggGGCGUuGcGCCGGugGUc -3'
miRNA:   3'- uaaaCGUA-CuuUCGUA-C-CGGCUugCG- -5'
6511 3' -48.4 NC_001847.1 + 18766 0.66 0.996606
Target:  5'- ---cGCGgcuAAGGCGgcGGCCGAcaGCGCg -3'
miRNA:   3'- uaaaCGUac-UUUCGUa-CCGGCU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 19724 0.74 0.8626
Target:  5'- ---cGCGac-GAGguUGGCCGGACGCg -3'
miRNA:   3'- uaaaCGUacuUUCguACCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 19758 0.66 0.998359
Target:  5'- ---aGCggGAAGGCGgggugcgGGCUcGGCGCa -3'
miRNA:   3'- uaaaCGuaCUUUCGUa------CCGGcUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 20061 0.7 0.959303
Target:  5'- cGUUUGCggGAGcGGCGUGGCgGcucccgcGGCGCg -3'
miRNA:   3'- -UAAACGuaCUU-UCGUACCGgC-------UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 21000 0.66 0.997978
Target:  5'- --cUGCAUGcuGGUgcGaacucacGCCGAGCGCg -3'
miRNA:   3'- uaaACGUACuuUCGuaC-------CGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 21618 0.66 0.998359
Target:  5'- ---cGC-UGgcGGCGcuUGGCCG-GCGCg -3'
miRNA:   3'- uaaaCGuACuuUCGU--ACCGGCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 21775 0.7 0.973262
Target:  5'- ---cGCcgGGcccGGCGccGGCCGGGCGCg -3'
miRNA:   3'- uaaaCGuaCUu--UCGUa-CCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 22610 0.72 0.907199
Target:  5'- ---cGCGUGGcAAGCgaGUGGCCGcgcagGGCGCg -3'
miRNA:   3'- uaaaCGUACU-UUCG--UACCGGC-----UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 22898 0.71 0.946829
Target:  5'- --cUGCA--AGAGCAUGGCUGGGCu- -3'
miRNA:   3'- uaaACGUacUUUCGUACCGGCUUGcg -5'
6511 3' -48.4 NC_001847.1 + 25449 0.72 0.925854
Target:  5'- ---aGCGccGAcuGCA-GGCCGAGCGCg -3'
miRNA:   3'- uaaaCGUa-CUuuCGUaCCGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 27094 0.69 0.985142
Target:  5'- ---cGC-UGGAGGCGUcGCCGAggucGCGCc -3'
miRNA:   3'- uaaaCGuACUUUCGUAcCGGCU----UGCG- -5'
6511 3' -48.4 NC_001847.1 + 28491 0.66 0.996606
Target:  5'- --cUGC-UGAcgccuucuggcgAGGCGUGGCCcGGcaGCGCg -3'
miRNA:   3'- uaaACGuACU------------UUCGUACCGG-CU--UGCG- -5'
6511 3' -48.4 NC_001847.1 + 29722 0.66 0.996606
Target:  5'- --cUGCGgcgcGGGAGCgGUGGCC-AACGUa -3'
miRNA:   3'- uaaACGUa---CUUUCG-UACCGGcUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 30170 0.71 0.955671
Target:  5'- --gUGCGUGGcgcucGGCGgaccUGGCCG-ACGCg -3'
miRNA:   3'- uaaACGUACUu----UCGU----ACCGGCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 31212 0.69 0.983169
Target:  5'- ---cGC-UGAGGGCGcGGCgUGGGCGCg -3'
miRNA:   3'- uaaaCGuACUUUCGUaCCG-GCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 31707 0.72 0.925854
Target:  5'- ---gGCGgggGGAGGCGcgGGCCGcGCGCc -3'
miRNA:   3'- uaaaCGUa--CUUUCGUa-CCGGCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 32012 0.67 0.992495
Target:  5'- ---gGCGUGGAgcgcgaAGCuccGGCgGGGCGCg -3'
miRNA:   3'- uaaaCGUACUU------UCGua-CCGgCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 33012 0.66 0.998016
Target:  5'- ---gGCcgGggGGCGcgcggggcgaGGCgCGGACGCg -3'
miRNA:   3'- uaaaCGuaCuuUCGUa---------CCG-GCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 33218 0.67 0.995984
Target:  5'- ----aCGUGAuGGCGaugcUGGCCGAGUGCg -3'
miRNA:   3'- uaaacGUACUuUCGU----ACCGGCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.