miRNA display CGI


Results 41 - 60 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 5' -65 NC_001847.1 + 70285 0.76 0.112527
Target:  5'- gCGCGCCUGGCGGGgUCGCg--GCGCg -3'
miRNA:   3'- gGCGCGGGCCGUCCgGGCGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 112554 0.76 0.112527
Target:  5'- aCGCGaCCgGGCGGGCCCuGCCccgggGCGCc -3'
miRNA:   3'- gGCGC-GGgCCGUCCGGG-CGGaa---CGUG- -5'
6511 5' -65 NC_001847.1 + 58302 0.76 0.115368
Target:  5'- gCgGCGgCCGGCAGGCCgGCaugGCGCc -3'
miRNA:   3'- -GgCGCgGGCCGUCCGGgCGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 89631 0.75 0.118276
Target:  5'- uCCGCGCCgcccggCGGCGGcGCCCGCCccGgGCg -3'
miRNA:   3'- -GGCGCGG------GCCGUC-CGGGCGGaaCgUG- -5'
6511 5' -65 NC_001847.1 + 76923 0.75 0.118276
Target:  5'- gCUGcCGCCCGGCGGGCagauCCGCCcggaGCGCc -3'
miRNA:   3'- -GGC-GCGGGCCGUCCG----GGCGGaa--CGUG- -5'
6511 5' -65 NC_001847.1 + 69151 0.75 0.118276
Target:  5'- gCGUGCCCGGCGGuGCaCauaGCCgUGCACu -3'
miRNA:   3'- gGCGCGGGCCGUC-CG-Gg--CGGaACGUG- -5'
6511 5' -65 NC_001847.1 + 10444 0.75 0.121251
Target:  5'- cCCGCGCCCGGCuccccuGGCC-GCgUUGCu- -3'
miRNA:   3'- -GGCGCGGGCCGu-----CCGGgCGgAACGug -5'
6511 5' -65 NC_001847.1 + 73708 0.75 0.121251
Target:  5'- gCCGCGCCCGGC-GGCgCgGCCgcggGCGu -3'
miRNA:   3'- -GGCGCGGGCCGuCCG-GgCGGaa--CGUg -5'
6511 5' -65 NC_001847.1 + 106827 0.75 0.124296
Target:  5'- gCCGgGCCCGGC--GCCCGCCUcuCGCg -3'
miRNA:   3'- -GGCgCGGGCCGucCGGGCGGAacGUG- -5'
6511 5' -65 NC_001847.1 + 4014 0.75 0.124296
Target:  5'- gCCGgGCCCGGC--GCCCGCCUcuCGCg -3'
miRNA:   3'- -GGCgCGGGCCGucCGGGCGGAacGUG- -5'
6511 5' -65 NC_001847.1 + 78324 0.75 0.124296
Target:  5'- gCGCGCgCC-GCGGGCCCGgCUUGgGCg -3'
miRNA:   3'- gGCGCG-GGcCGUCCGGGCgGAACgUG- -5'
6511 5' -65 NC_001847.1 + 61848 0.75 0.127412
Target:  5'- gCCGuCGCCgGcGUAGGCCgCGCCUgccgGCGCc -3'
miRNA:   3'- -GGC-GCGGgC-CGUCCGG-GCGGAa---CGUG- -5'
6511 5' -65 NC_001847.1 + 98062 0.75 0.127412
Target:  5'- uCCGCGCUCaGGCGGGCCaguaCCgcgUGCACc -3'
miRNA:   3'- -GGCGCGGG-CCGUCCGGgc--GGa--ACGUG- -5'
6511 5' -65 NC_001847.1 + 21192 0.75 0.130601
Target:  5'- aCGCGCCCGGCGGcGUaggagacgCCGCCgcgaccGCGCg -3'
miRNA:   3'- gGCGCGGGCCGUC-CG--------GGCGGaa----CGUG- -5'
6511 5' -65 NC_001847.1 + 124589 0.75 0.130601
Target:  5'- gCCGgGCCCGGC--GCCgGCCggGCGCg -3'
miRNA:   3'- -GGCgCGGGCCGucCGGgCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 21776 0.75 0.130601
Target:  5'- gCCGgGCCCGGC--GCCgGCCggGCGCg -3'
miRNA:   3'- -GGCgCGGGCCGucCGGgCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 10157 0.74 0.137199
Target:  5'- cUCuCGCCCGaGCAGGCCgGCCcgcUGCGCc -3'
miRNA:   3'- -GGcGCGGGC-CGUCCGGgCGGa--ACGUG- -5'
6511 5' -65 NC_001847.1 + 43658 0.74 0.137199
Target:  5'- -aGgGCUCGGguGGCCCGCCgcagGUGCu -3'
miRNA:   3'- ggCgCGGGCCguCCGGGCGGaa--CGUG- -5'
6511 5' -65 NC_001847.1 + 112970 0.74 0.137199
Target:  5'- cUCuCGCCCGaGCAGGCCgGCCcgcUGCGCc -3'
miRNA:   3'- -GGcGCGGGC-CGUCCGGgCGGa--ACGUG- -5'
6511 5' -65 NC_001847.1 + 71697 0.74 0.139579
Target:  5'- gCCGCGUCCGcgucugcgcggugcGCcGGCCCGCCggcgccgcgUGCGCu -3'
miRNA:   3'- -GGCGCGGGC--------------CGuCCGGGCGGa--------ACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.