miRNA display CGI


Results 41 - 60 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 5' -65 NC_001847.1 + 31091 0.66 0.478444
Target:  5'- gCUGCGgCCGGUguaccuGGCCUGCgggcgGCGCg -3'
miRNA:   3'- -GGCGCgGGCCGu-----CCGGGCGgaa--CGUG- -5'
6511 5' -65 NC_001847.1 + 19678 0.66 0.478444
Target:  5'- aCGUGCCCGcGCGGGUgUGgcguuuCCUUGC-Cg -3'
miRNA:   3'- gGCGCGGGC-CGUCCGgGC------GGAACGuG- -5'
6511 5' -65 NC_001847.1 + 19022 0.66 0.478444
Target:  5'- cCCaGCGCCCGGCcgaaAGGCCgagaagcaGCCc-GCAg -3'
miRNA:   3'- -GG-CGCGGGCCG----UCCGGg-------CGGaaCGUg -5'
6511 5' -65 NC_001847.1 + 65446 0.66 0.478444
Target:  5'- gCGCGCCgCGGaccgAGcGCCgGCCccGCGCc -3'
miRNA:   3'- gGCGCGG-GCCg---UC-CGGgCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 43795 0.66 0.478444
Target:  5'- gCGCGCgCCGGCGcGCCgGUCgaggGCGa -3'
miRNA:   3'- gGCGCG-GGCCGUcCGGgCGGaa--CGUg -5'
6511 5' -65 NC_001847.1 + 3045 0.66 0.478444
Target:  5'- gCGCGCCCaGCAG--CCGCag-GCGCa -3'
miRNA:   3'- gGCGCGGGcCGUCcgGGCGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 10211 0.66 0.478444
Target:  5'- gCCGgGCCCagGGCGcGCCCGCUgu-CGCc -3'
miRNA:   3'- -GGCgCGGG--CCGUcCGGGCGGaacGUG- -5'
6511 5' -65 NC_001847.1 + 133904 0.66 0.478444
Target:  5'- gCUGCGgCCGGUguaccuGGCCUGCgggcgGCGCg -3'
miRNA:   3'- -GGCGCgGGCCGu-----CCGGGCGgaa--CGUG- -5'
6511 5' -65 NC_001847.1 + 131883 0.66 0.478444
Target:  5'- gCCGCGCggcgCCGGCGccCCUGCCgccggcgaGCACg -3'
miRNA:   3'- -GGCGCG----GGCCGUccGGGCGGaa------CGUG- -5'
6511 5' -65 NC_001847.1 + 75365 0.66 0.478444
Target:  5'- gCGCGUCuCGGCGGGCauggGCacgGCACc -3'
miRNA:   3'- gGCGCGG-GCCGUCCGgg--CGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 34601 0.66 0.478444
Target:  5'- gCCGCGgCCGGCuc-CCCGCCcaccCACu -3'
miRNA:   3'- -GGCGCgGGCCGuccGGGCGGaac-GUG- -5'
6511 5' -65 NC_001847.1 + 101470 0.66 0.478444
Target:  5'- cCUGCGCcucuagccCCGcGCGGGCCgCGgCCacGCGCg -3'
miRNA:   3'- -GGCGCG--------GGC-CGUCCGG-GC-GGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 52648 0.66 0.477545
Target:  5'- gCCGauggcCGCCCGcacggccGCGGGCUCGUCccacgGCACg -3'
miRNA:   3'- -GGC-----GCGGGC-------CGUCCGGGCGGaa---CGUG- -5'
6511 5' -65 NC_001847.1 + 2929 0.66 0.477545
Target:  5'- uCCGCGCCgccagcgCGGCcgccuccagcgcGGcGgCCGCCUcgGCGCg -3'
miRNA:   3'- -GGCGCGG-------GCCG------------UC-CgGGCGGAa-CGUG- -5'
6511 5' -65 NC_001847.1 + 122229 0.66 0.477545
Target:  5'- gCGCGCCCccgcggcGGCAcGGCgCGCgCUUcCGCg -3'
miRNA:   3'- gGCGCGGG-------CCGU-CCGgGCG-GAAcGUG- -5'
6511 5' -65 NC_001847.1 + 14556 0.66 0.472166
Target:  5'- aCCGCGCCgcagcgcgggugcUGGCGGGCgCgcggcucucuaaggaCGCCgucugGCGCg -3'
miRNA:   3'- -GGCGCGG-------------GCCGUCCG-G---------------GCGGaa---CGUG- -5'
6511 5' -65 NC_001847.1 + 38553 0.66 0.469489
Target:  5'- cCCGCGUuaCUGGCAGcGCCUGCUgccggaGcCGCg -3'
miRNA:   3'- -GGCGCG--GGCCGUC-CGGGCGGaa----C-GUG- -5'
6511 5' -65 NC_001847.1 + 33233 0.66 0.469489
Target:  5'- gCCGCGCCgGGCGccgcGGCgccuCCGCUgccgcgguccGCGCg -3'
miRNA:   3'- -GGCGCGGgCCGU----CCG----GGCGGaa--------CGUG- -5'
6511 5' -65 NC_001847.1 + 40776 0.66 0.469489
Target:  5'- gUGCGCgCGGCAGaCgCCGCC--GCGCc -3'
miRNA:   3'- gGCGCGgGCCGUCcG-GGCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 31246 0.66 0.469489
Target:  5'- gCGCGCCCGGaaauGuGCUCGaUCgUGCACc -3'
miRNA:   3'- gGCGCGGGCCgu--C-CGGGC-GGaACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.