miRNA display CGI


Results 21 - 40 of 814 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 5' -65 NC_001847.1 + 47793 0.66 0.487483
Target:  5'- -gGUGCUCGGcCAGGCCCucgGCCga-CACc -3'
miRNA:   3'- ggCGCGGGCC-GUCCGGG---CGGaacGUG- -5'
6511 5' -65 NC_001847.1 + 26602 0.66 0.487483
Target:  5'- aCCGC-CCCgcgGGCAGGUaaGCCcucccagGCGCa -3'
miRNA:   3'- -GGCGcGGG---CCGUCCGggCGGaa-----CGUG- -5'
6511 5' -65 NC_001847.1 + 103351 0.66 0.487483
Target:  5'- aCCGCcacgGCCguaaGGCAGGCCguguugGCCggcGCGCg -3'
miRNA:   3'- -GGCG----CGGg---CCGUCCGGg-----CGGaa-CGUG- -5'
6511 5' -65 NC_001847.1 + 57858 0.66 0.487483
Target:  5'- gCGgGCCUGuCGGGUcgCCGCCgucGCACg -3'
miRNA:   3'- gGCgCGGGCcGUCCG--GGCGGaa-CGUG- -5'
6511 5' -65 NC_001847.1 + 47690 0.66 0.487483
Target:  5'- gCGCGCgCC-GCGGGgCCGUUgaGCGCg -3'
miRNA:   3'- gGCGCG-GGcCGUCCgGGCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 81253 0.66 0.487483
Target:  5'- gUCGCGaggaCGGgGGGCCCGCCcgccccCGCg -3'
miRNA:   3'- -GGCGCgg--GCCgUCCGGGCGGaac---GUG- -5'
6511 5' -65 NC_001847.1 + 8127 0.66 0.487483
Target:  5'- aCCGCGgggCgGGCGGGCCgacgaGCCUcGCGg -3'
miRNA:   3'- -GGCGCg--GgCCGUCCGGg----CGGAaCGUg -5'
6511 5' -65 NC_001847.1 + 60987 0.66 0.486575
Target:  5'- gCGCGCCCacGGCgccgucgAGG-CCGCCaucgGCGCc -3'
miRNA:   3'- gGCGCGGG--CCG-------UCCgGGCGGaa--CGUG- -5'
6511 5' -65 NC_001847.1 + 50267 0.66 0.486575
Target:  5'- aCGCGCUgGGCGcguacguGGgCCGCCUaGC-Cg -3'
miRNA:   3'- gGCGCGGgCCGU-------CCgGGCGGAaCGuG- -5'
6511 5' -65 NC_001847.1 + 36449 0.66 0.484762
Target:  5'- gCGCGCgCGGCgcggcugugugagcGGGaCCUGCaCcUGCGCg -3'
miRNA:   3'- gGCGCGgGCCG--------------UCC-GGGCG-GaACGUG- -5'
6511 5' -65 NC_001847.1 + 27441 0.66 0.48205
Target:  5'- gCC-CGCCCGcgagcgccgccaaccGCAGGCgCCGUCacugacUGCACg -3'
miRNA:   3'- -GGcGCGGGC---------------CGUCCG-GGCGGa-----ACGUG- -5'
6511 5' -65 NC_001847.1 + 113024 0.66 0.478444
Target:  5'- gCCGgGCCCagGGCGcGCCCGCUgu-CGCc -3'
miRNA:   3'- -GGCgCGGG--CCGUcCGGGCGGaacGUG- -5'
6511 5' -65 NC_001847.1 + 65446 0.66 0.478444
Target:  5'- gCGCGCCgCGGaccgAGcGCCgGCCccGCGCc -3'
miRNA:   3'- gGCGCGG-GCCg---UC-CGGgCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 131883 0.66 0.478444
Target:  5'- gCCGCGCggcgCCGGCGccCCUGCCgccggcgaGCACg -3'
miRNA:   3'- -GGCGCG----GGCCGUccGGGCGGaa------CGUG- -5'
6511 5' -65 NC_001847.1 + 75365 0.66 0.478444
Target:  5'- gCGCGUCuCGGCGGGCauggGCacgGCACc -3'
miRNA:   3'- gGCGCGG-GCCGUCCGgg--CGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 43795 0.66 0.478444
Target:  5'- gCGCGCgCCGGCGcGCCgGUCgaggGCGa -3'
miRNA:   3'- gGCGCG-GGCCGUcCGGgCGGaa--CGUg -5'
6511 5' -65 NC_001847.1 + 3045 0.66 0.478444
Target:  5'- gCGCGCCCaGCAG--CCGCag-GCGCa -3'
miRNA:   3'- gGCGCGGGcCGUCcgGGCGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 133904 0.66 0.478444
Target:  5'- gCUGCGgCCGGUguaccuGGCCUGCgggcgGCGCg -3'
miRNA:   3'- -GGCGCgGGCCGu-----CCGGGCGgaa--CGUG- -5'
6511 5' -65 NC_001847.1 + 101376 0.66 0.478444
Target:  5'- uUGCGCCgCGGgGGcuGCCCGCg--GCGCc -3'
miRNA:   3'- gGCGCGG-GCCgUC--CGGGCGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 32193 0.66 0.478444
Target:  5'- gCGCGCgCGGCggAGGUuaccgCgGCCUUGgACg -3'
miRNA:   3'- gGCGCGgGCCG--UCCG-----GgCGGAACgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.