miRNA display CGI


Results 41 - 60 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6512 3' -68.1 NC_001847.1 + 56835 0.66 0.320103
Target:  5'- -cGGGgagGGGgCGGCCca-GCCGCCCGa -3'
miRNA:   3'- cuUCCa--CCCgGCCGGcccCGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 134999 0.66 0.320103
Target:  5'- -----cGGccccCCGGCCGGGGCCcgagGCCCGc -3'
miRNA:   3'- cuuccaCCc---GGCCGGCCCCGG----CGGGU- -5'
6512 3' -68.1 NC_001847.1 + 28090 0.66 0.320103
Target:  5'- ---uGUGGcGCCuGcCCGGGGCCGCgCGc -3'
miRNA:   3'- cuucCACC-CGGcC-GGCCCCGGCGgGU- -5'
6512 3' -68.1 NC_001847.1 + 47775 0.67 0.31332
Target:  5'- cGAAGGc-GGCCacGGCCGGGuGCuCGgCCAg -3'
miRNA:   3'- -CUUCCacCCGG--CCGGCCC-CG-GCgGGU- -5'
6512 3' -68.1 NC_001847.1 + 65505 0.67 0.31332
Target:  5'- -cGGuGUGGGgCGGCgCGcgcagugcGGCCGCCCGg -3'
miRNA:   3'- cuUC-CACCCgGCCG-GCc-------CCGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 114931 0.67 0.31332
Target:  5'- --cGG-GGGCUcgcguuuggcggGGCgGGGcGCCGCCCc -3'
miRNA:   3'- cuuCCaCCCGG------------CCGgCCC-CGGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 125456 0.67 0.306647
Target:  5'- cGGAGGacGGGCgGGUCGGcGGCaGCUCGc -3'
miRNA:   3'- -CUUCCa-CCCGgCCGGCC-CCGgCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 108142 0.67 0.306647
Target:  5'- aGAAGGccGGCCGGUCGGagcuggcuagccGGCCGCg-- -3'
miRNA:   3'- -CUUCCacCCGGCCGGCC------------CCGGCGggu -5'
6512 3' -68.1 NC_001847.1 + 5329 0.67 0.306647
Target:  5'- aGAAGGccGGCCGGUCGGagcuggcuagccGGCCGCg-- -3'
miRNA:   3'- -CUUCCacCCGGCCGGCC------------CCGGCGggu -5'
6512 3' -68.1 NC_001847.1 + 31574 0.67 0.306647
Target:  5'- cGgcGGcGGGCCGGCCucgcccuaggGGGGcCCGCg-- -3'
miRNA:   3'- -CuuCCaCCCGGCCGG----------CCCC-GGCGggu -5'
6512 3' -68.1 NC_001847.1 + 37592 0.67 0.306647
Target:  5'- --cGGcUGcGG-CGGCCgGGGGCCGgCCCGc -3'
miRNA:   3'- cuuCC-AC-CCgGCCGG-CCCCGGC-GGGU- -5'
6512 3' -68.1 NC_001847.1 + 75034 0.67 0.306647
Target:  5'- aGAAGGcgccgucGGUgGGCgGGaGGCUGCCCAc -3'
miRNA:   3'- -CUUCCac-----CCGgCCGgCC-CCGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 134387 0.67 0.306647
Target:  5'- cGgcGGcGGGCCGGCCucgcccuaggGGGGcCCGCg-- -3'
miRNA:   3'- -CuuCCaCCCGGCCGG----------CCCC-GGCGggu -5'
6512 3' -68.1 NC_001847.1 + 31223 0.67 0.300084
Target:  5'- -cGGcGUGGGCgCGcGaaagCGGGGCgCGCCCGg -3'
miRNA:   3'- cuUC-CACCCG-GC-Cg---GCCCCG-GCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 79551 0.67 0.300084
Target:  5'- gGggGGgcugGGGCUcGCgGGGGgCGCCgGg -3'
miRNA:   3'- -CuuCCa---CCCGGcCGgCCCCgGCGGgU- -5'
6512 3' -68.1 NC_001847.1 + 81238 0.67 0.300084
Target:  5'- cGgcGGcGGGCCaGGCUGGGccuGCCGCUg- -3'
miRNA:   3'- -CuuCCaCCCGG-CCGGCCC---CGGCGGgu -5'
6512 3' -68.1 NC_001847.1 + 88918 0.67 0.298136
Target:  5'- --uGGUGcgagauuuccccgcGGCCGGCCcggcGGcGGCCGCCg- -3'
miRNA:   3'- cuuCCAC--------------CCGGCCGG----CC-CCGGCGGgu -5'
6512 3' -68.1 NC_001847.1 + 32407 0.67 0.296198
Target:  5'- gGggGGUuucgccuugGGGCa-GCCGGGgggugcgggccuuucGCCGCCCGc -3'
miRNA:   3'- -CuuCCA---------CCCGgcCGGCCC---------------CGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 58835 0.67 0.293629
Target:  5'- cGAGGGUcGGCacuugGGCCGGGcCCGCaCCu -3'
miRNA:   3'- -CUUCCAcCCGg----CCGGCCCcGGCG-GGu -5'
6512 3' -68.1 NC_001847.1 + 87356 0.67 0.293629
Target:  5'- cGAGGGccUGGccgagcacCCGGCCGuGGCCGCCUu -3'
miRNA:   3'- -CUUCC--ACCc-------GGCCGGCcCCGGCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.