miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6512 3' -68.1 NC_001847.1 + 134641 0.66 0.353444
Target:  5'- uGggGGcGGGCCGGCagcaggcgcggaggCGcGGGCa-CCCAu -3'
miRNA:   3'- -CuuCCaCCCGGCCG--------------GC-CCCGgcGGGU- -5'
6512 3' -68.1 NC_001847.1 + 74248 0.66 0.351244
Target:  5'- cGAGGUGGaGgucacgcaacucuucCCGGgCGcGGCCGCCCu -3'
miRNA:   3'- cUUCCACC-C---------------GGCCgGCcCCGGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 32930 0.66 0.348326
Target:  5'- gGGAGGa-GGCCGGCggCGGGGCCGg--- -3'
miRNA:   3'- -CUUCCacCCGGCCG--GCCCCGGCgggu -5'
6512 3' -68.1 NC_001847.1 + 12353 0.66 0.347599
Target:  5'- --cGGUGGGCCuGGCuCGGGagcgucggcggcuGCgGCCUc -3'
miRNA:   3'- cuuCCACCCGG-CCG-GCCC-------------CGgCGGGu -5'
6512 3' -68.1 NC_001847.1 + 82390 0.66 0.347599
Target:  5'- --uGGUcaGGGCgGGCCGcuuguccGGGaCGCCCAu -3'
miRNA:   3'- cuuCCA--CCCGgCCGGC-------CCCgGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 59549 0.66 0.341106
Target:  5'- aGgcGGUgGGGgCGGCgGGGGCgGUgCCGg -3'
miRNA:   3'- -CuuCCA-CCCgGCCGgCCCCGgCG-GGU- -5'
6512 3' -68.1 NC_001847.1 + 87429 0.66 0.341106
Target:  5'- -cGGGcgacGGGCUGGCguuccCGGcGGCCGCCa- -3'
miRNA:   3'- cuUCCa---CCCGGCCG-----GCC-CCGGCGGgu -5'
6512 3' -68.1 NC_001847.1 + 25124 0.66 0.341106
Target:  5'- aGAGaGcGGGCggCGGCCGcGGCUGCCUAa -3'
miRNA:   3'- cUUC-CaCCCG--GCCGGCcCCGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 127937 0.66 0.341106
Target:  5'- aGAGaGcGGGCggCGGCCGcGGCUGCCUAa -3'
miRNA:   3'- cUUC-CaCCCG--GCCGGCcCCGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 57672 0.66 0.338962
Target:  5'- aGgcGGUGGGCaCGGUggugcugggcgccgCGGGuGCCGCgCu -3'
miRNA:   3'- -CuuCCACCCG-GCCG--------------GCCC-CGGCGgGu -5'
6512 3' -68.1 NC_001847.1 + 28324 0.66 0.333996
Target:  5'- -cGGGcgccGGGcCCGGCgccccgCGGGGCCGCgCGc -3'
miRNA:   3'- cuUCCa---CCC-GGCCG------GCCCCGGCGgGU- -5'
6512 3' -68.1 NC_001847.1 + 131137 0.66 0.333996
Target:  5'- -cGGGcgccGGGcCCGGCgccccgCGGGGCCGCgCGc -3'
miRNA:   3'- cuUCCa---CCC-GGCCG------GCCCCGGCGgGU- -5'
6512 3' -68.1 NC_001847.1 + 34167 0.66 0.333996
Target:  5'- cGAGGcGGcugaggcgcuGCgGGCCGGGGgcgcgcacgucCCGCCCGa -3'
miRNA:   3'- cUUCCaCC----------CGgCCGGCCCC-----------GGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 70802 0.66 0.333996
Target:  5'- --cGGcgGGGCCGGgaGGGGauCCGCCgAg -3'
miRNA:   3'- cuuCCa-CCCGGCCggCCCC--GGCGGgU- -5'
6512 3' -68.1 NC_001847.1 + 16833 0.66 0.333996
Target:  5'- --cGGUGGcGCgGGCauCGGGGCggCGCUCGa -3'
miRNA:   3'- cuuCCACC-CGgCCG--GCCCCG--GCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 134786 0.66 0.326995
Target:  5'- cGGGGcGGGCC--CCGGGGCgcgaaGCCCGg -3'
miRNA:   3'- cUUCCaCCCGGccGGCCCCGg----CGGGU- -5'
6512 3' -68.1 NC_001847.1 + 73231 0.66 0.326995
Target:  5'- aGGAGG-GGGgCGGCggCGcGGGCgCGCUCGa -3'
miRNA:   3'- -CUUCCaCCCgGCCG--GC-CCCG-GCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 31973 0.66 0.326995
Target:  5'- cGGGGcGGGCC--CCGGGGCgcgaaGCCCGg -3'
miRNA:   3'- cUUCCaCCCGGccGGCCCCGg----CGGGU- -5'
6512 3' -68.1 NC_001847.1 + 76397 0.66 0.320103
Target:  5'- gGggGGgcgccggGGGCCgcGGCgGGGGCaC-CCCGc -3'
miRNA:   3'- -CuuCCa------CCCGG--CCGgCCCCG-GcGGGU- -5'
6512 3' -68.1 NC_001847.1 + 28090 0.66 0.320103
Target:  5'- ---uGUGGcGCCuGcCCGGGGCCGCgCGc -3'
miRNA:   3'- cuucCACC-CGGcC-GGCCCCGGCGgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.