miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6512 3' -68.1 NC_001847.1 + 13910 0.69 0.203311
Target:  5'- cGAcGGUGGcuggggcgcucgguGCCGcGCCgcggcaggGGGGCCGCCCc -3'
miRNA:   3'- -CUuCCACC--------------CGGC-CGG--------CCCCGGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 14212 0.68 0.268894
Target:  5'- uGgcGGUcaGGCCGGCCGGGGgCGUg-- -3'
miRNA:   3'- -CuuCCAc-CCGGCCGGCCCCgGCGggu -5'
6512 3' -68.1 NC_001847.1 + 15017 0.68 0.25717
Target:  5'- --cGGUgGGGCCGcgcgaGCCGcGGCCGCCgGg -3'
miRNA:   3'- cuuCCA-CCCGGC-----CGGCcCCGGCGGgU- -5'
6512 3' -68.1 NC_001847.1 + 15128 0.66 0.366093
Target:  5'- cGgcGGcGGuGCUGGCCuugcuacugcgcgucGGGGCCGCUUg -3'
miRNA:   3'- -CuuCCaCC-CGGCCGG---------------CCCCGGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 16627 0.68 0.251467
Target:  5'- uGggGGgGGGCgCGGCggcuuugccguCGGGGCCccgcGCCUAc -3'
miRNA:   3'- -CuuCCaCCCG-GCCG-----------GCCCCGG----CGGGU- -5'
6512 3' -68.1 NC_001847.1 + 16833 0.66 0.333996
Target:  5'- --cGGUGGcGCgGGCauCGGGGCggCGCUCGa -3'
miRNA:   3'- cuuCCACC-CGgCCG--GCCCCG--GCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 17308 0.68 0.256021
Target:  5'- aGAGGUcGGGCCGGuCCGcucuuguggugcaGGGCCacaccgaGCCCu -3'
miRNA:   3'- cUUCCA-CCCGGCC-GGC-------------CCCGG-------CGGGu -5'
6512 3' -68.1 NC_001847.1 + 19729 0.67 0.274916
Target:  5'- cGAGGUuGGCCGGaCGcggcGGGCCGCUUAg -3'
miRNA:   3'- cUUCCAcCCGGCCgGC----CCCGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 21397 0.77 0.058677
Target:  5'- gGAGGGgauucGGGCCGGCCGaggauucGGGCCGgCCGa -3'
miRNA:   3'- -CUUCCa----CCCGGCCGGC-------CCCGGCgGGU- -5'
6512 3' -68.1 NC_001847.1 + 21495 0.68 0.240373
Target:  5'- cGAAGGaauuugccGGGCgcgccuCGGCgGGGGCCGCgCGg -3'
miRNA:   3'- -CUUCCa-------CCCG------GCCGgCCCCGGCGgGU- -5'
6512 3' -68.1 NC_001847.1 + 21585 0.68 0.262979
Target:  5'- aGAGG-GGGCCG--CGGGGCCccGCCCc -3'
miRNA:   3'- cUUCCaCCCGGCcgGCCCCGG--CGGGu -5'
6512 3' -68.1 NC_001847.1 + 21736 0.7 0.17376
Target:  5'- -cGGGccGGcGCCGGCCcgcgcgcgcgggGGGGCCGCCg- -3'
miRNA:   3'- cuUCCa-CC-CGGCCGG------------CCCCGGCGGgu -5'
6512 3' -68.1 NC_001847.1 + 21962 0.7 0.186488
Target:  5'- -cGGGcgcUGGGCCGcggcGCCGGuuGCCGCCCGc -3'
miRNA:   3'- cuUCC---ACCCGGC----CGGCCc-CGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 22815 0.67 0.293629
Target:  5'- -----cGGGCCGG-CGGcGGCCGCUCc -3'
miRNA:   3'- cuuccaCCCGGCCgGCC-CCGGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 22923 0.66 0.363089
Target:  5'- uGGGGUGGGCUGGgCuGGGCUggGCUgGg -3'
miRNA:   3'- cUUCCACCCGGCCgGcCCCGG--CGGgU- -5'
6512 3' -68.1 NC_001847.1 + 22962 0.68 0.262979
Target:  5'- uGGGGUGGGCUgggcugGGCUGGGGUgGgCUg -3'
miRNA:   3'- cUUCCACCCGG------CCGGCCCCGgCgGGu -5'
6512 3' -68.1 NC_001847.1 + 23022 0.66 0.363089
Target:  5'- uGGGGUGGGCUGGgCuGGGCUggGCUgGg -3'
miRNA:   3'- cUUCCACCCGGCCgGcCCCGG--CGGgU- -5'
6512 3' -68.1 NC_001847.1 + 23072 0.71 0.165711
Target:  5'- uGGGGUGGGCUgGGCUGGGGUgGgCUg -3'
miRNA:   3'- cUUCCACCCGG-CCGGCCCCGgCgGGu -5'
6512 3' -68.1 NC_001847.1 + 23102 0.71 0.165711
Target:  5'- uGGGGUGGGCUgGGCUGGGGUgGgCUg -3'
miRNA:   3'- cUUCCACCCGG-CCGGCCCCGgCgGGu -5'
6512 3' -68.1 NC_001847.1 + 23132 0.68 0.262979
Target:  5'- uGGGGUGGGCUgggcugGGCUGGGGUgGgCUg -3'
miRNA:   3'- cUUCCACCCGG------CCGGCCCCGgCgGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.