miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6512 3' -68.1 NC_001847.1 + 880 0.72 0.140117
Target:  5'- cGgcGGcGGcCCGcGCCGGGGCCGCCgCGg -3'
miRNA:   3'- -CuuCCaCCcGGC-CGGCCCCGGCGG-GU- -5'
6512 3' -68.1 NC_001847.1 + 2423 0.7 0.20003
Target:  5'- cGAGGGgccccccgcgGcGGCCGGCa-GGGCCGCCg- -3'
miRNA:   3'- -CUUCCa---------C-CCGGCCGgcCCCGGCGGgu -5'
6512 3' -68.1 NC_001847.1 + 2540 0.68 0.251467
Target:  5'- --cGGcGGcgcucccgccGCCgGGCCGGGGCgGCCCu -3'
miRNA:   3'- cuuCCaCC----------CGG-CCGGCCCCGgCGGGu -5'
6512 3' -68.1 NC_001847.1 + 3147 0.66 0.355654
Target:  5'- --cGGcGGcGCCGGCgGcgcggcGGGCCGCCUc -3'
miRNA:   3'- cuuCCaCC-CGGCCGgC------CCCGGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 3976 0.66 0.353444
Target:  5'- cGAGGGcgccggGGGCCGGgCGcGcGGCCccgcggggcgccggGCCCGg -3'
miRNA:   3'- -CUUCCa-----CCCGGCCgGC-C-CCGG--------------CGGGU- -5'
6512 3' -68.1 NC_001847.1 + 4834 0.71 0.169693
Target:  5'- -cGGGUGGGUCGGCC--GGCCGUCa- -3'
miRNA:   3'- cuUCCACCCGGCCGGccCCGGCGGgu -5'
6512 3' -68.1 NC_001847.1 + 5329 0.67 0.306647
Target:  5'- aGAAGGccGGCCGGUCGGagcuggcuagccGGCCGCg-- -3'
miRNA:   3'- -CUUCCacCCGGCCGGCC------------CCGGCGggu -5'
6512 3' -68.1 NC_001847.1 + 5676 1.07 0.000282
Target:  5'- cGAAGGUGGGCCGGCCGGGGCCGCCCAg -3'
miRNA:   3'- -CUUCCACCCGGCCGGCCCCGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 6680 0.69 0.234981
Target:  5'- -uAGGccgcgGcGGCCGGCCGGGcGCgCGCgCAg -3'
miRNA:   3'- cuUCCa----C-CCGGCCGGCCC-CG-GCGgGU- -5'
6512 3' -68.1 NC_001847.1 + 6933 0.71 0.164533
Target:  5'- uGAAGGUgcacacgaagacGGGCCaGGCgCGGGGucgcggcggcgcuuCCGCCCGc -3'
miRNA:   3'- -CUUCCA------------CCCGG-CCG-GCCCC--------------GGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 7860 0.67 0.281046
Target:  5'- --cGGUGGcGCCuGCagaGGcGGCCGCCaCAa -3'
miRNA:   3'- cuuCCACC-CGGcCGg--CC-CCGGCGG-GU- -5'
6512 3' -68.1 NC_001847.1 + 8131 0.67 0.281046
Target:  5'- cGGGGcGGGCgGGCCgacgagccucgcGGGGCUGCUUg -3'
miRNA:   3'- cUUCCaCCCGgCCGG------------CCCCGGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 8460 0.69 0.214421
Target:  5'- cGGAGGcGGcGCCgGGCCGGGGgcggCGCUCGg -3'
miRNA:   3'- -CUUCCaCC-CGG-CCGGCCCCg---GCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 9748 0.66 0.355654
Target:  5'- -cGGGcGGGCCcugccCCGGGGC-GCCCGc -3'
miRNA:   3'- cuUCCaCCCGGcc---GGCCCCGgCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 10360 0.69 0.219411
Target:  5'- cGAGG-GGGCCGccGCCGaaagccccccccGGuGCCGCCCGc -3'
miRNA:   3'- cUUCCaCCCGGC--CGGC------------CC-CGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 11293 0.7 0.19091
Target:  5'- cGggGGUcucgGGGCCucagGGCCGGGGCacuaccuccaaCGCCa- -3'
miRNA:   3'- -CuuCCA----CCCGG----CCGGCCCCG-----------GCGGgu -5'
6512 3' -68.1 NC_001847.1 + 12353 0.66 0.347599
Target:  5'- --cGGUGGGCCuGGCuCGGGagcgucggcggcuGCgGCCUc -3'
miRNA:   3'- cuuCCACCCGG-CCG-GCCC-------------CGgCGGGu -5'
6512 3' -68.1 NC_001847.1 + 12712 0.67 0.280428
Target:  5'- aGAGGUGccgcuGCCcaggauuuuggagGGCCGGGuGCgGCCCAg -3'
miRNA:   3'- cUUCCACc----CGG-------------CCGGCCC-CGgCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 12951 0.71 0.169693
Target:  5'- --cGGUGGGgCGGCgggccgGGGGUgGCCCGg -3'
miRNA:   3'- cuuCCACCCgGCCGg-----CCCCGgCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 13874 0.68 0.268894
Target:  5'- cGAGGGgGGGCgccuuUGGCCGGGa--GCCCAg -3'
miRNA:   3'- -CUUCCaCCCG-----GCCGGCCCcggCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.