miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6512 3' -68.1 NC_001847.1 + 108489 1.07 0.000282
Target:  5'- cGAAGGUGGGCCGGCCGGGGCCGCCCAg -3'
miRNA:   3'- -CUUCCACCCGGCCGGCCCCGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 5676 1.07 0.000282
Target:  5'- cGAAGGUGGGCCGGCCGGGGCCGCCCAg -3'
miRNA:   3'- -CUUCCACCCGGCCGGCCCCGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 124210 0.77 0.058677
Target:  5'- gGAGGGgauucGGGCCGGCCGaggauucGGGCCGgCCGa -3'
miRNA:   3'- -CUUCCa----CCCGGCCGGC-------CCCGGCgGGU- -5'
6512 3' -68.1 NC_001847.1 + 21397 0.77 0.058677
Target:  5'- gGAGGGgauucGGGCCGGCCGaggauucGGGCCGgCCGa -3'
miRNA:   3'- -CUUCCa----CCCGGCCGGC-------CCCGGCgGGU- -5'
6512 3' -68.1 NC_001847.1 + 92176 0.76 0.065075
Target:  5'- -----cGGGCCGGCCGGcGGcCCGCCCc -3'
miRNA:   3'- cuuccaCCCGGCCGGCC-CC-GGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 123482 0.76 0.066734
Target:  5'- -----cGGGCuCGGCUGGGGCCGCCgCAa -3'
miRNA:   3'- cuuccaCCCG-GCCGGCCCCGGCGG-GU- -5'
6512 3' -68.1 NC_001847.1 + 118896 0.75 0.079547
Target:  5'- -cGGGgccgGGGCCggGGCCGGGGCCGaggCCGg -3'
miRNA:   3'- cuUCCa---CCCGG--CCGGCCCCGGCg--GGU- -5'
6512 3' -68.1 NC_001847.1 + 90860 0.75 0.08156
Target:  5'- -cGGGgccgGGGCUggugucgaGGCCGGGGCCguuGCCCAg -3'
miRNA:   3'- cuUCCa---CCCGG--------CCGGCCCCGG---CGGGU- -5'
6512 3' -68.1 NC_001847.1 + 134227 0.75 0.085732
Target:  5'- cGgcGGUGGGaaGGCCGGGuCCGCCUc -3'
miRNA:   3'- -CuuCCACCCggCCGGCCCcGGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 123546 0.75 0.087457
Target:  5'- cAAGGccgcugcgaacgGGGCUugGGCCGGGGCCGCCgCGa -3'
miRNA:   3'- cUUCCa-----------CCCGG--CCGGCCCCGGCGG-GU- -5'
6512 3' -68.1 NC_001847.1 + 70683 0.74 0.089215
Target:  5'- gGAGGGgaccgcgggcccgGGGCUGGCCGuGGCCGCCg- -3'
miRNA:   3'- -CUUCCa------------CCCGGCCGGCcCCGGCGGgu -5'
6512 3' -68.1 NC_001847.1 + 54512 0.74 0.104536
Target:  5'- cGGGGUGGGgggCGGUggggCGGGGCCGUCCGg -3'
miRNA:   3'- cUUCCACCCg--GCCG----GCCCCGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 101150 0.73 0.107143
Target:  5'- cGggGGcugGGGCCggGGCCGGGGCCGg--- -3'
miRNA:   3'- -CuuCCa--CCCGG--CCGGCCCCGGCgggu -5'
6512 3' -68.1 NC_001847.1 + 98662 0.73 0.115335
Target:  5'- cGAAGccgGGGCCGaaGCCGGGGCCGaagCCGg -3'
miRNA:   3'- -CUUCca-CCCGGC--CGGCCCCGGCg--GGU- -5'
6512 3' -68.1 NC_001847.1 + 42964 0.73 0.115335
Target:  5'- cGggGG-GGGCgGGCCGccGGCCGgCCCGg -3'
miRNA:   3'- -CuuCCaCCCGgCCGGCc-CCGGC-GGGU- -5'
6512 3' -68.1 NC_001847.1 + 29517 0.73 0.115335
Target:  5'- cGGAGGUGccGGCgCGGCUGGcGGCCGCgCu -3'
miRNA:   3'- -CUUCCAC--CCG-GCCGGCC-CCGGCGgGu -5'
6512 3' -68.1 NC_001847.1 + 132330 0.73 0.115335
Target:  5'- cGGAGGUGccGGCgCGGCUGGcGGCCGCgCu -3'
miRNA:   3'- -CUUCCAC--CCG-GCCGGCC-CCGGCGgGu -5'
6512 3' -68.1 NC_001847.1 + 98698 0.73 0.115335
Target:  5'- cGAAGccgGGGCCGaaGCCGGGGCCGaagCCGg -3'
miRNA:   3'- -CUUCca-CCCGGC--CGGCCCCGGCg--GGU- -5'
6512 3' -68.1 NC_001847.1 + 57667 0.73 0.121117
Target:  5'- --cGGcGGGCCgGGCCGGGcGCCcggcGCCCGc -3'
miRNA:   3'- cuuCCaCCCGG-CCGGCCC-CGG----CGGGU- -5'
6512 3' -68.1 NC_001847.1 + 44033 0.72 0.133498
Target:  5'- aGAGGGcUGcagcgaGGCgCGcGUCGGGGCCGCCCu -3'
miRNA:   3'- -CUUCC-AC------CCG-GC-CGGCCCCGGCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.