miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6512 3' -68.1 NC_001847.1 + 880 0.72 0.140117
Target:  5'- cGgcGGcGGcCCGcGCCGGGGCCGCCgCGg -3'
miRNA:   3'- -CuuCCaCCcGGC-CGGCCCCGGCGG-GU- -5'
6512 3' -68.1 NC_001847.1 + 103693 0.72 0.140117
Target:  5'- cGgcGGcGGcCCGcGCCGGGGCCGCCgCGg -3'
miRNA:   3'- -CuuCCaCCcGGC-CGGCCCCGGCGG-GU- -5'
6512 3' -68.1 NC_001847.1 + 82465 0.72 0.143538
Target:  5'- --cGGcGGGcCCGGCCccggccacGGGGCCGCCgAa -3'
miRNA:   3'- cuuCCaCCC-GGCCGG--------CCCCGGCGGgU- -5'
6512 3' -68.1 NC_001847.1 + 34293 0.71 0.145978
Target:  5'- --cGGcGGGCCggcgcuccggcccuGGCCGGaGCCGCCCGg -3'
miRNA:   3'- cuuCCaCCCGG--------------CCGGCCcCGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 75127 0.71 0.15061
Target:  5'- aGAAGGcccGGGCCccGCCGGGGCCGgCg- -3'
miRNA:   3'- -CUUCCa--CCCGGc-CGGCCCCGGCgGgu -5'
6512 3' -68.1 NC_001847.1 + 71074 0.71 0.15061
Target:  5'- cGAGGGcggcgagGcGGCCGGCCaGGGCguccagCGCCCAg -3'
miRNA:   3'- -CUUCCa------C-CCGGCCGGcCCCG------GCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 94744 0.71 0.154264
Target:  5'- -cGGGcuuUGGGCgcgucuUGGCCGGGGCCGUCg- -3'
miRNA:   3'- cuUCC---ACCCG------GCCGGCCCCGGCGGgu -5'
6512 3' -68.1 NC_001847.1 + 32890 0.71 0.157998
Target:  5'- cGAGGccucggGGGCCGgcggggaaGCCGGGGCCGCg-- -3'
miRNA:   3'- cUUCCa-----CCCGGC--------CGGCCCCGGCGggu -5'
6512 3' -68.1 NC_001847.1 + 56399 0.71 0.157998
Target:  5'- gGGAGGUcGGCCGGCgCGGGGacaGCCa- -3'
miRNA:   3'- -CUUCCAcCCGGCCG-GCCCCgg-CGGgu -5'
6512 3' -68.1 NC_001847.1 + 50115 0.71 0.161813
Target:  5'- --uGG-GGGCCGGgCUGGGGCUGUCg- -3'
miRNA:   3'- cuuCCaCCCGGCC-GGCCCCGGCGGgu -5'
6512 3' -68.1 NC_001847.1 + 6933 0.71 0.164533
Target:  5'- uGAAGGUgcacacgaagacGGGCCaGGCgCGGGGucgcggcggcgcuuCCGCCCGc -3'
miRNA:   3'- -CUUCCA------------CCCGG-CCG-GCCCC--------------GGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 23072 0.71 0.165711
Target:  5'- uGGGGUGGGCUgGGCUGGGGUgGgCUg -3'
miRNA:   3'- cUUCCACCCGG-CCGGCCCCGgCgGGu -5'
6512 3' -68.1 NC_001847.1 + 125915 0.71 0.165711
Target:  5'- uGGGGUGGGCUgGGCUGGGGUgGgCUg -3'
miRNA:   3'- cUUCCACCCGG-CCGGCCCCGgCgGGu -5'
6512 3' -68.1 NC_001847.1 + 23102 0.71 0.165711
Target:  5'- uGGGGUGGGCUgGGCUGGGGUgGgCUg -3'
miRNA:   3'- cUUCCACCCGG-CCGGCCCCGgCgGGu -5'
6512 3' -68.1 NC_001847.1 + 125885 0.71 0.165711
Target:  5'- uGGGGUGGGCUgGGCUGGGGUgGgCUg -3'
miRNA:   3'- cUUCCACCCGG-CCGGCCCCGgCgGGu -5'
6512 3' -68.1 NC_001847.1 + 101061 0.71 0.165711
Target:  5'- -----cGaGGCCGGCCccGGGGCCGCCgCGg -3'
miRNA:   3'- cuuccaC-CCGGCCGG--CCCCGGCGG-GU- -5'
6512 3' -68.1 NC_001847.1 + 12951 0.71 0.169693
Target:  5'- --cGGUGGGgCGGCgggccgGGGGUgGCCCGg -3'
miRNA:   3'- cuuCCACCCgGCCGg-----CCCCGgCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 96271 0.71 0.169693
Target:  5'- --uGGcgGGGCCGGaaCCGGGGCCGUa-- -3'
miRNA:   3'- cuuCCa-CCCGGCC--GGCCCCGGCGggu -5'
6512 3' -68.1 NC_001847.1 + 31832 0.71 0.169693
Target:  5'- cAGGG-GGGuuGGCgCGcGGCCGCCCc -3'
miRNA:   3'- cUUCCaCCCggCCG-GCcCCGGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 134645 0.71 0.169693
Target:  5'- cAGGG-GGGuuGGCgCGcGGCCGCCCc -3'
miRNA:   3'- cUUCCaCCCggCCG-GCcCCGGCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.