miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6512 3' -68.1 NC_001847.1 + 134999 0.66 0.320103
Target:  5'- -----cGGccccCCGGCCGGGGCCcgagGCCCGc -3'
miRNA:   3'- cuuccaCCc---GGCCGGCCCCGG----CGGGU- -5'
6512 3' -68.1 NC_001847.1 + 134786 0.66 0.326995
Target:  5'- cGGGGcGGGCC--CCGGGGCgcgaaGCCCGg -3'
miRNA:   3'- cUUCCaCCCGGccGGCCCCGg----CGGGU- -5'
6512 3' -68.1 NC_001847.1 + 134645 0.71 0.169693
Target:  5'- cAGGG-GGGuuGGCgCGcGGCCGCCCc -3'
miRNA:   3'- cUUCCaCCCggCCG-GCcCCGGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 134641 0.66 0.353444
Target:  5'- uGggGGcGGGCCGGCagcaggcgcggaggCGcGGGCa-CCCAu -3'
miRNA:   3'- -CuuCCaCCCGGCCG--------------GC-CCCGgcGGGU- -5'
6512 3' -68.1 NC_001847.1 + 134387 0.67 0.306647
Target:  5'- cGgcGGcGGGCCGGCCucgcccuaggGGGGcCCGCg-- -3'
miRNA:   3'- -CuuCCaCCCGGCCGG----------CCCC-GGCGggu -5'
6512 3' -68.1 NC_001847.1 + 134239 0.68 0.251467
Target:  5'- --cGGcGGGCggCGGCCGGcGGCCGCg-- -3'
miRNA:   3'- cuuCCaCCCG--GCCGGCC-CCGGCGggu -5'
6512 3' -68.1 NC_001847.1 + 134227 0.75 0.085732
Target:  5'- cGgcGGUGGGaaGGCCGGGuCCGCCUc -3'
miRNA:   3'- -CuuCCACCCggCCGGCCCcGGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 134160 0.68 0.25717
Target:  5'- aGAAGGUGcGuGCgGGCCGGcGCauagaCGCCCGg -3'
miRNA:   3'- -CUUCCAC-C-CGgCCGGCCcCG-----GCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 132797 0.7 0.19091
Target:  5'- --cGGccGGGCCGGCgcggCGGGaGCCGCCg- -3'
miRNA:   3'- cuuCCa-CCCGGCCG----GCCC-CGGCGGgu -5'
6512 3' -68.1 NC_001847.1 + 132432 0.67 0.281046
Target:  5'- uGGAGGUggaggacaugaGGGCCGgggcGCCGcGGGCgGaCCCGg -3'
miRNA:   3'- -CUUCCA-----------CCCGGC----CGGC-CCCGgC-GGGU- -5'
6512 3' -68.1 NC_001847.1 + 132330 0.73 0.115335
Target:  5'- cGGAGGUGccGGCgCGGCUGGcGGCCGCgCu -3'
miRNA:   3'- -CUUCCAC--CCG-GCCGGCC-CCGGCGgGu -5'
6512 3' -68.1 NC_001847.1 + 131137 0.66 0.333996
Target:  5'- -cGGGcgccGGGcCCGGCgccccgCGGGGCCGCgCGc -3'
miRNA:   3'- cuUCCa---CCC-GGCCG------GCCCCGGCGgGU- -5'
6512 3' -68.1 NC_001847.1 + 131081 0.69 0.209528
Target:  5'- cGAGGcUGaGGCCGGgaCUGGGGCCGggaCCAg -3'
miRNA:   3'- cUUCC-AC-CCGGCC--GGCCCCGGCg--GGU- -5'
6512 3' -68.1 NC_001847.1 + 129316 0.69 0.204731
Target:  5'- cAAGGcGGGCCugccgggcgcggGGCCGGGGgCGUUCGg -3'
miRNA:   3'- cUUCCaCCCGG------------CCGGCCCCgGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 127937 0.66 0.341106
Target:  5'- aGAGaGcGGGCggCGGCCGcGGCUGCCUAa -3'
miRNA:   3'- cUUC-CaCCCG--GCCGGCcCCGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 125985 0.68 0.262979
Target:  5'- uGGGGUGGGCUgggcugGGCUGGGGUgGgCUg -3'
miRNA:   3'- cUUCCACCCGG------CCGGCCCCGgCgGGu -5'
6512 3' -68.1 NC_001847.1 + 125945 0.68 0.262979
Target:  5'- uGGGGUGGGCUgggcugGGCUGGGGUgGgCUg -3'
miRNA:   3'- cUUCCACCCGG------CCGGCCCCGgCgGGu -5'
6512 3' -68.1 NC_001847.1 + 125915 0.71 0.165711
Target:  5'- uGGGGUGGGCUgGGCUGGGGUgGgCUg -3'
miRNA:   3'- cUUCCACCCGG-CCGGCCCCGgCgGGu -5'
6512 3' -68.1 NC_001847.1 + 125885 0.71 0.165711
Target:  5'- uGGGGUGGGCUgGGCUGGGGUgGgCUg -3'
miRNA:   3'- cUUCCACCCGG-CCGGCCCCGgCgGGu -5'
6512 3' -68.1 NC_001847.1 + 125835 0.66 0.363089
Target:  5'- uGGGGUGGGCUGGgCuGGGCUggGCUgGg -3'
miRNA:   3'- cUUCCACCCGGCCgGcCCCGG--CGGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.