Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 51586 | 0.68 | 0.618049 |
Target: 5'- -cCGGG-GCaGCCgucGGGAGGGCagUGCUc -3' miRNA: 3'- aaGUCCaCG-CGGa--CCCUCCCGa-AUGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 53363 | 0.66 | 0.729784 |
Target: 5'- -cCAGGUccGCGUCauacgcGGGcAGGGCUagcUGCCg -3' miRNA: 3'- aaGUCCA--CGCGGa-----CCC-UCCCGA---AUGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 56811 | 0.69 | 0.577153 |
Target: 5'- -aCGGGgccggcGCGCCUGGGggcgcggggagGGGGCggcccaGCCg -3' miRNA: 3'- aaGUCCa-----CGCGGACCC-----------UCCCGaa----UGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 61319 | 0.7 | 0.478491 |
Target: 5'- -gCGGGUGCGCg-GGGcGGGGCggGCg -3' miRNA: 3'- aaGUCCACGCGgaCCC-UCCCGaaUGg -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 62782 | 0.68 | 0.60779 |
Target: 5'- -cCGGGUcuGgGCCcGGGGGGGCgagAUCg -3' miRNA: 3'- aaGUCCA--CgCGGaCCCUCCCGaa-UGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 68064 | 0.68 | 0.587335 |
Target: 5'- cUCGcGGcGCGCCUGcGGcGGGGCgaacGCCg -3' miRNA: 3'- aAGU-CCaCGCGGAC-CC-UCCCGaa--UGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 69562 | 0.7 | 0.517109 |
Target: 5'- -gCGcGUGUGCCUGGG-GGGCcacgugGCCg -3' miRNA: 3'- aaGUcCACGCGGACCCuCCCGaa----UGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 76393 | 0.67 | 0.679546 |
Target: 5'- cUCGGGggggGCGCCgGGGgccgcggcgGGGGC--ACCc -3' miRNA: 3'- aAGUCCa---CGCGGaCCC---------UCCCGaaUGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 87780 | 0.66 | 0.71987 |
Target: 5'- gUCGGGc-CGCC-GGGGGGGCacgACUa -3' miRNA: 3'- aAGUCCacGCGGaCCCUCCCGaa-UGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 87913 | 0.67 | 0.699822 |
Target: 5'- -aCAGGggcgGgGCgUGGGGcuGGGCgcgGCCg -3' miRNA: 3'- aaGUCCa---CgCGgACCCU--CCCGaa-UGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 95529 | 0.66 | 0.749349 |
Target: 5'- -cCAGGcuUGCcCCUGGGgcuGGGGCcgcGCCg -3' miRNA: 3'- aaGUCC--ACGcGGACCC---UCCCGaa-UGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 98880 | 0.66 | 0.709879 |
Target: 5'- -gCGcGUGCGCCUGGGc-GGCccagGCCg -3' miRNA: 3'- aaGUcCACGCGGACCCucCCGaa--UGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 102699 | 0.67 | 0.699822 |
Target: 5'- -gCAGG-GCGCC-GGGcGGGCggcgaaagGCCc -3' miRNA: 3'- aaGUCCaCGCGGaCCCuCCCGaa------UGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 108080 | 0.69 | 0.556913 |
Target: 5'- ---cGGUGcCGCCcGGG-GGGCUgcggGCCu -3' miRNA: 3'- aaguCCAC-GCGGaCCCuCCCGAa---UGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 108525 | 1.09 | 0.001215 |
Target: 5'- gUUCAGGUGCGCCUGGGAGGGCUUACCu -3' miRNA: 3'- -AAGUCCACGCGGACCCUCCCGAAUGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 111271 | 0.66 | 0.739614 |
Target: 5'- gUCGGaGgcgGCGCCgggccGGGGGcGGCgcucgGCCg -3' miRNA: 3'- aAGUC-Ca--CGCGGa----CCCUC-CCGaa---UGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 119651 | 0.66 | 0.71987 |
Target: 5'- -aCGGG-GCaGCCgggcGGGAGGGCaacggcgGCCc -3' miRNA: 3'- aaGUCCaCG-CGGa---CCCUCCCGaa-----UGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 124548 | 0.66 | 0.715882 |
Target: 5'- -gCGGGccgGCGCCggcccgcgcgcgcGGGGGGGCc-GCCg -3' miRNA: 3'- aaGUCCa--CGCGGa------------CCCUCCCGaaUGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 124767 | 0.66 | 0.749349 |
Target: 5'- -gCGGGcgGCaCCgGGGGGGGCUUucggcggcgGCCc -3' miRNA: 3'- aaGUCCa-CGcGGaCCCUCCCGAA---------UGG- -5' |
|||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 124914 | 0.68 | 0.617022 |
Target: 5'- -gCAGGcGCGCCgGGGGcgacagcGGGCgcGCCc -3' miRNA: 3'- aaGUCCaCGCGGaCCCU-------CCCGaaUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home