Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 68064 | 0.68 | 0.587335 |
Target: 5'- cUCGcGGcGCGCCUGcGGcGGGGCgaacGCCg -3' miRNA: 3'- aAGU-CCaCGCGGAC-CC-UCCCGaa--UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 42609 | 0.68 | 0.597549 |
Target: 5'- -aCAGGgacgGCGCCgccgcgGaGGGGGGCggcagcGCCg -3' miRNA: 3'- aaGUCCa---CGCGGa-----C-CCUCCCGaa----UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 45090 | 0.68 | 0.60779 |
Target: 5'- cUCGuGGUGCGCCgggacgggGGuGGGGGCagACa -3' miRNA: 3'- aAGU-CCACGCGGa-------CC-CUCCCGaaUGg -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 62782 | 0.68 | 0.60779 |
Target: 5'- -cCGGGUcuGgGCCcGGGGGGGCgagAUCg -3' miRNA: 3'- aaGUCCA--CgCGGaCCCUCCCGaa-UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 125764 | 0.68 | 0.60779 |
Target: 5'- cUgGGGUGgGCUgGGGuGGGCUggGCUg -3' miRNA: 3'- aAgUCCACgCGGaCCCuCCCGAa-UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 125824 | 0.68 | 0.60779 |
Target: 5'- cUgGGGUGgGCUgGGGuGGGCUggGCUg -3' miRNA: 3'- aAgUCCACgCGGaCCCuCCCGAa-UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 21735 | 0.66 | 0.715882 |
Target: 5'- -gCGGGccgGCGCCggcccgcgcgcgcGGGGGGGCc-GCCg -3' miRNA: 3'- aaGUCCa--CGCGGa------------CCCUCCCGaaUGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 98880 | 0.66 | 0.709879 |
Target: 5'- -gCGcGUGCGCCUGGGc-GGCccagGCCg -3' miRNA: 3'- aaGUcCACGCGGACCCucCCGaa--UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 31701 | 0.67 | 0.689708 |
Target: 5'- cUCGGGgGCGgg-GGGAGGcGCggGCCg -3' miRNA: 3'- aAGUCCaCGCggaCCCUCC-CGaaUGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 22953 | 0.67 | 0.648858 |
Target: 5'- --uGGGUGgGCUgGGGuGGGCUggGCUg -3' miRNA: 3'- aagUCCACgCGGaCCCuCCCGAa-UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 17793 | 0.68 | 0.628318 |
Target: 5'- gUUCAGGacGgGCCccagcgggcGGGAGGGCgccaUGCCa -3' miRNA: 3'- -AAGUCCa-CgCGGa--------CCCUCCCGa---AUGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 51586 | 0.68 | 0.618049 |
Target: 5'- -cCGGG-GCaGCCgucGGGAGGGCagUGCUc -3' miRNA: 3'- aaGUCCaCG-CGGa--CCCUCCCGa-AUGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 23071 | 0.66 | 0.71987 |
Target: 5'- cUgGGGUGgGCUgggcugGGGuGGGCUggGCUg -3' miRNA: 3'- aAgUCCACgCGGa-----CCCuCCCGAa-UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 23116 | 0.66 | 0.71987 |
Target: 5'- cUgGGGUGgGCUgggcugGGGuGGGCUggGCUg -3' miRNA: 3'- aAgUCCACgCGGa-----CCCuCCCGAa-UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 46914 | 0.66 | 0.71987 |
Target: 5'- cUUCGGGggGCGCgUcGGGcccGGGCUccggGCCg -3' miRNA: 3'- -AAGUCCa-CGCGgA-CCCu--CCCGAa---UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 53363 | 0.66 | 0.729784 |
Target: 5'- -cCAGGUccGCGUCauacgcGGGcAGGGCUagcUGCCg -3' miRNA: 3'- aaGUCCA--CGCGGa-----CCC-UCCCGA---AUGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 32120 | 0.66 | 0.729784 |
Target: 5'- cUCGGGcccccggGCGCCgGGGgcgggggcgGGGGCggggGCCc -3' miRNA: 3'- aAGUCCa------CGCGGaCCC---------UCCCGaa--UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 8458 | 0.66 | 0.739614 |
Target: 5'- gUCGGaGgcgGCGCCgggccGGGGGcGGCgcucgGCCg -3' miRNA: 3'- aAGUC-Ca--CGCGGa----CCCUC-CCGaa---UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 95529 | 0.66 | 0.749349 |
Target: 5'- -cCAGGcuUGCcCCUGGGgcuGGGGCcgcGCCg -3' miRNA: 3'- aaGUCC--ACGcGGACCC---UCCCGaa-UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 5712 | 1.09 | 0.001215 |
Target: 5'- gUUCAGGUGCGCCUGGGAGGGCUUACCu -3' miRNA: 3'- -AAGUCCACGCGGACCCUCCCGAAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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