miRNA display CGI


Results 1 - 20 of 758 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6513 5' -60 NC_001847.1 + 422 0.67 0.660803
Target:  5'- cCcgGGgCGgGCGGGCgGCgGCGgcgGCg -3'
miRNA:   3'- aGuaCCgGUgCGUCCGgCGgUGCa--CG- -5'
6513 5' -60 NC_001847.1 + 491 0.66 0.730075
Target:  5'- ---cGGCgGCG-GGGCgGCCGCGcGCc -3'
miRNA:   3'- aguaCCGgUGCgUCCGgCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 886 0.77 0.188689
Target:  5'- ---cGGcCCGCGCcgGGGCCGCCGCG-GCc -3'
miRNA:   3'- aguaCC-GGUGCG--UCCGGCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 946 0.67 0.670833
Target:  5'- ---cGGcCCGCGCGcGCCGCucCACGcUGCg -3'
miRNA:   3'- aguaCC-GGUGCGUcCGGCG--GUGC-ACG- -5'
6513 5' -60 NC_001847.1 + 975 0.72 0.378411
Target:  5'- cCcgGGCCG-GCGGGgcuuCCGCCGCGgcgGCg -3'
miRNA:   3'- aGuaCCGGUgCGUCC----GGCGGUGCa--CG- -5'
6513 5' -60 NC_001847.1 + 1005 0.71 0.429008
Target:  5'- ---cGGCaCGCGCuccaccAGGCCGCCGCccGCg -3'
miRNA:   3'- aguaCCG-GUGCG------UCCGGCGGUGcaCG- -5'
6513 5' -60 NC_001847.1 + 1103 0.75 0.240404
Target:  5'- ---cGGCCGCggGCGGcGCCGCCGCG-GCc -3'
miRNA:   3'- aguaCCGGUG--CGUC-CGGCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 1172 0.75 0.252071
Target:  5'- ---cGGCCGCGCAGaaggccaCCGCCGCGgccgGCa -3'
miRNA:   3'- aguaCCGGUGCGUCc------GGCGGUGCa---CG- -5'
6513 5' -60 NC_001847.1 + 1448 0.75 0.246181
Target:  5'- gCGUGGCCaccguguaGCGCAcguuGCCGCCGCG-GCa -3'
miRNA:   3'- aGUACCGG--------UGCGUc---CGGCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 1600 0.67 0.620541
Target:  5'- cUcgGGCCAgCGCGcGGCgcacugCGCCGCG-GCa -3'
miRNA:   3'- aGuaCCGGU-GCGU-CCG------GCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 1640 0.66 0.700706
Target:  5'- ---cGG-CGCGCAGGUa--CACGUGCg -3'
miRNA:   3'- aguaCCgGUGCGUCCGgcgGUGCACG- -5'
6513 5' -60 NC_001847.1 + 1720 0.7 0.483378
Target:  5'- aUCAgccgccGCCGCGCcgcGGCCaGCCGCGcGCa -3'
miRNA:   3'- -AGUac----CGGUGCGu--CCGG-CGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 1938 0.7 0.455756
Target:  5'- ---cGGCCACuCGGGCCGCCG-GcGCu -3'
miRNA:   3'- aguaCCGGUGcGUCCGGCGGUgCaCG- -5'
6513 5' -60 NC_001847.1 + 2045 0.72 0.34698
Target:  5'- cCGUGGCCACGauaGGGUC-UUugGUGCg -3'
miRNA:   3'- aGUACCGGUGCg--UCCGGcGGugCACG- -5'
6513 5' -60 NC_001847.1 + 2056 0.69 0.502232
Target:  5'- ---aGGCCACGC--GCCGCCGCa-GCg -3'
miRNA:   3'- aguaCCGGUGCGucCGGCGGUGcaCG- -5'
6513 5' -60 NC_001847.1 + 2167 0.66 0.699717
Target:  5'- ---aGGUCuCGCAGcgcccgcGCCGCCugggcgGCGUGCg -3'
miRNA:   3'- aguaCCGGuGCGUC-------CGGCGG------UGCACG- -5'
6513 5' -60 NC_001847.1 + 2207 0.72 0.386562
Target:  5'- cUCggGGCgGCaGUAGGCCGCCAgCGccGCg -3'
miRNA:   3'- -AGuaCCGgUG-CGUCCGGCGGU-GCa-CG- -5'
6513 5' -60 NC_001847.1 + 2289 0.68 0.60043
Target:  5'- cCGUcGGCgGCG-GGGCCGCCGgGcgGCa -3'
miRNA:   3'- aGUA-CCGgUGCgUCCGGCGGUgCa-CG- -5'
6513 5' -60 NC_001847.1 + 2352 0.69 0.521402
Target:  5'- ----cGCCGCGCcGGCCcgGCCGCGUcgGCg -3'
miRNA:   3'- aguacCGGUGCGuCCGG--CGGUGCA--CG- -5'
6513 5' -60 NC_001847.1 + 2440 0.67 0.630612
Target:  5'- ---cGGCCG-GCAgGGCCGCCGCcucGCc -3'
miRNA:   3'- aguaCCGGUgCGU-CCGGCGGUGca-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.