miRNA display CGI


Results 1 - 20 of 758 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6513 5' -60 NC_001847.1 + 40906 0.76 0.208091
Target:  5'- aCAUGGgCACGCGGGCacaacgGCCuuuuCGUGCc -3'
miRNA:   3'- aGUACCgGUGCGUCCGg-----CGGu---GCACG- -5'
6513 5' -60 NC_001847.1 + 77576 0.77 0.170896
Target:  5'- ---cGGCCGCGCGGGCCGagcucgCACGgcgGCa -3'
miRNA:   3'- aguaCCGGUGCGUCCGGCg-----GUGCa--CG- -5'
6513 5' -60 NC_001847.1 + 3670 0.77 0.175198
Target:  5'- cCAU-GCCA-GCAGGCCGCCGCGagccUGCg -3'
miRNA:   3'- aGUAcCGGUgCGUCCGGCGGUGC----ACG- -5'
6513 5' -60 NC_001847.1 + 131683 0.77 0.178267
Target:  5'- cCAUGGCCGCGCAGaacgcgcugugggcGCUGCCgcACGUGg -3'
miRNA:   3'- aGUACCGGUGCGUC--------------CGGCGG--UGCACg -5'
6513 5' -60 NC_001847.1 + 74396 0.77 0.188689
Target:  5'- ---gGGaCCGCGC-GGCCGCCGCGcGCg -3'
miRNA:   3'- aguaCC-GGUGCGuCCGGCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 103699 0.77 0.188689
Target:  5'- ---cGGcCCGCGCcgGGGCCGCCGCG-GCc -3'
miRNA:   3'- aguaCC-GGUGCG--UCCGGCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 115064 0.77 0.188689
Target:  5'- gCcgGGCCGCGCcgcgGGaGCCGCCACGccGCu -3'
miRNA:   3'- aGuaCCGGUGCG----UC-CGGCGGUGCa-CG- -5'
6513 5' -60 NC_001847.1 + 93295 0.77 0.193385
Target:  5'- ---cGGCggCGCGCAGGCCGCgcgCGCGUGUg -3'
miRNA:   3'- aguaCCG--GUGCGUCCGGCG---GUGCACG- -5'
6513 5' -60 NC_001847.1 + 87676 0.76 0.208091
Target:  5'- gCAUGGCCcggGCGCugGGGCUGCUGCG-GCg -3'
miRNA:   3'- aGUACCGG---UGCG--UCCGGCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 106525 0.77 0.170896
Target:  5'- ---gGGCCcCGC-GGCCGCCGCGUaGCg -3'
miRNA:   3'- aguaCCGGuGCGuCCGGCGGUGCA-CG- -5'
6513 5' -60 NC_001847.1 + 75707 0.78 0.150774
Target:  5'- cUcgGGCCAcgggcCGCGGGCCGCCGcCGUGg -3'
miRNA:   3'- aGuaCCGGU-----GCGUCCGGCGGU-GCACg -5'
6513 5' -60 NC_001847.1 + 134265 0.79 0.139757
Target:  5'- ---cGGCCccgGCGCGGGCCGCCGCcgcgcguggagGUGCu -3'
miRNA:   3'- aguaCCGG---UGCGUCCGGCGGUG-----------CACG- -5'
6513 5' -60 NC_001847.1 + 101955 0.86 0.042954
Target:  5'- gUCAUGGCCGCgagcucGCGGGCCGUCACG-GCa -3'
miRNA:   3'- -AGUACCGGUG------CGUCCGGCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 133801 0.83 0.073108
Target:  5'- aCAUGGCCGCGCAGGgCGCgGCGcugggGCu -3'
miRNA:   3'- aGUACCGGUGCGUCCgGCGgUGCa----CG- -5'
6513 5' -60 NC_001847.1 + 10061 0.83 0.077061
Target:  5'- aUCuUGGCCGCGCGGGCCcagcgccccGCCGCGcGCg -3'
miRNA:   3'- -AGuACCGGUGCGUCCGG---------CGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 105685 0.82 0.087857
Target:  5'- ---aGGCCgacGCGCGGGCCGCCGCGccGCg -3'
miRNA:   3'- aguaCCGG---UGCGUCCGGCGGUGCa-CG- -5'
6513 5' -60 NC_001847.1 + 34457 0.8 0.108171
Target:  5'- ---aGGCCGCGguGGCCGCCgGCG-GCg -3'
miRNA:   3'- aguaCCGGUGCguCCGGCGG-UGCaCG- -5'
6513 5' -60 NC_001847.1 + 34134 0.79 0.126217
Target:  5'- ----uGCCGCGguGGCCGCCGCG-GCg -3'
miRNA:   3'- aguacCGGUGCguCCGGCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 133710 0.79 0.132828
Target:  5'- -gGUGGCCACGCgccuGGGcCCGCCACcgcgGUGCc -3'
miRNA:   3'- agUACCGGUGCG----UCC-GGCGGUG----CACG- -5'
6513 5' -60 NC_001847.1 + 52109 0.79 0.136252
Target:  5'- gUCAUGGCCACGCGGcCCGCgguaGUGCu -3'
miRNA:   3'- -AGUACCGGUGCGUCcGGCGgug-CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.