miRNA display CGI


Results 21 - 40 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 42168 0.66 0.280681
Target:  5'- uGUGGCUgCaCGCCgCCCgCCCGCCCgagCCg -3'
miRNA:   3'- gCGCCGG-GcGCGGaGGG-GGGCGGG---GG- -5'
6514 3' -71 NC_001847.1 + 57085 0.66 0.280681
Target:  5'- gGCGGCCagcgcuGCGCUggaCCgCCgCGCCgCCg -3'
miRNA:   3'- gCGCCGGg-----CGCGGa--GGgGG-GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 2230 0.66 0.299065
Target:  5'- uCGCGGCCguggaacaugaGCGUCUCCCaggugacgcggCgGCCCUCg -3'
miRNA:   3'- -GCGCCGGg----------CGCGGAGGGg----------GgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 9549 0.66 0.274168
Target:  5'- gCGUGcGCCaGCGCUgcagccgUCCagCCCGCCgCCCg -3'
miRNA:   3'- -GCGC-CGGgCGCGG-------AGGg-GGGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 1419 0.66 0.286707
Target:  5'- aCGCGGcCCCGCGCC-CCgCCaggcacuauuUGCgCUCg -3'
miRNA:   3'- -GCGCC-GGGCGCGGaGGgGG----------GCGgGGG- -5'
6514 3' -71 NC_001847.1 + 132808 0.66 0.292835
Target:  5'- gCGCGGCgggaGcCGCCgCUgCCCGCCCgCg -3'
miRNA:   3'- -GCGCCGgg--C-GCGGaGGgGGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 45568 0.66 0.286707
Target:  5'- gGCGGCgUCGCG-CUCCa--CGCCCUCg -3'
miRNA:   3'- gCGCCG-GGCGCgGAGGgggGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 3212 0.66 0.274755
Target:  5'- uCGcCGGCgCaCGUGCCUCCgCgCCGCCgCg -3'
miRNA:   3'- -GC-GCCG-G-GCGCGGAGGgG-GGCGGgGg -5'
6514 3' -71 NC_001847.1 + 97842 0.66 0.283079
Target:  5'- gCGCGGgCUGCGCgcgccuuauacaaugCUCCagucgaCgCCGCCCCg -3'
miRNA:   3'- -GCGCCgGGCGCG---------------GAGGg-----G-GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 117330 0.66 0.274755
Target:  5'- cCGCacuGGCaUgGCGcCCUCCCgCCCGCUggggCCCg -3'
miRNA:   3'- -GCG---CCG-GgCGC-GGAGGG-GGGCGG----GGG- -5'
6514 3' -71 NC_001847.1 + 112315 0.66 0.271248
Target:  5'- gGUGGaCCaggGCgacauugcgagguaaGCCagguUCCCCUCGCCCCCc -3'
miRNA:   3'- gCGCC-GGg--CG---------------CGG----AGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 90416 0.66 0.286707
Target:  5'- gGCGGgCCacgaggcgGCGCC-CUUCCCGCUaCCCu -3'
miRNA:   3'- gCGCCgGG--------CGCGGaGGGGGGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 14454 0.66 0.299065
Target:  5'- gCGCGGCCgcgcugcucggCGUGCgCUCCaaCgCCGUCCCg -3'
miRNA:   3'- -GCGCCGG-----------GCGCG-GAGG--GgGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 21723 0.66 0.274755
Target:  5'- aCGCGGCgCCGUugUUCCCCCCgacgcuacGCUgCCg -3'
miRNA:   3'- -GCGCCG-GGCGcgGAGGGGGG--------CGGgGG- -5'
6514 3' -71 NC_001847.1 + 78838 0.66 0.292835
Target:  5'- uCGCGGCCCGcCGCgCgacgCCgCagaCUGCUUCCa -3'
miRNA:   3'- -GCGCCGGGC-GCG-Ga---GG-Gg--GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 124546 0.66 0.292835
Target:  5'- gCGCgGGCCgGCGCCggCCCgCGCgCgCg -3'
miRNA:   3'- -GCG-CCGGgCGCGGagGGGgGCGgGgG- -5'
6514 3' -71 NC_001847.1 + 65509 0.66 0.280681
Target:  5'- gCGCGGCUgggacuCGCG-CUCUCCgCGCUCaCCg -3'
miRNA:   3'- -GCGCCGG------GCGCgGAGGGGgGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 29460 0.66 0.26893
Target:  5'- cCGCGGCCgaaGCGCCgCCCgCgGCCg-- -3'
miRNA:   3'- -GCGCCGGg--CGCGGaGGGgGgCGGggg -5'
6514 3' -71 NC_001847.1 + 112640 0.66 0.271248
Target:  5'- -cCGGCCCGcCGCCgCCaugagccacggccagCCuuGCCCCa -3'
miRNA:   3'- gcGCCGGGC-GCGGaGG---------------GGggCGGGGg -5'
6514 3' -71 NC_001847.1 + 45451 0.66 0.26893
Target:  5'- gGCaugGGCCCGCGCauaCCCCggGUCCUCg -3'
miRNA:   3'- gCG---CCGGGCGCGga-GGGGggCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.