miRNA display CGI


Results 1 - 20 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 5630 0.66 0.274755
Target:  5'- cCGCGGuCCCGCGCgCgCCaaagagCCCGUCCa- -3'
miRNA:   3'- -GCGCC-GGGCGCG-GaGGg-----GGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 18094 0.66 0.280681
Target:  5'- gGCgaGGCUUcCGCCUCCUCggcgaGCCCCCg -3'
miRNA:   3'- gCG--CCGGGcGCGGAGGGGgg---CGGGGG- -5'
6514 3' -71 NC_001847.1 + 124400 0.66 0.280681
Target:  5'- aGgGGgCCGCGggg--CCCCGCCCCCc -3'
miRNA:   3'- gCgCCgGGCGCggaggGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 45451 0.66 0.26893
Target:  5'- gGCaugGGCCCGCGCauaCCCCggGUCCUCg -3'
miRNA:   3'- gCG---CCGGGCGCGga-GGGGggCGGGGG- -5'
6514 3' -71 NC_001847.1 + 117330 0.66 0.274755
Target:  5'- cCGCacuGGCaUgGCGcCCUCCCgCCCGCUggggCCCg -3'
miRNA:   3'- -GCG---CCG-GgCGC-GGAGGG-GGGCGG----GGG- -5'
6514 3' -71 NC_001847.1 + 112315 0.66 0.271248
Target:  5'- gGUGGaCCaggGCgacauugcgagguaaGCCagguUCCCCUCGCCCCCc -3'
miRNA:   3'- gCGCC-GGg--CG---------------CGG----AGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 106741 0.66 0.280083
Target:  5'- uGCGcGCCCGCGCUggcgCCgCggcggggggggcgCCGUCUCCg -3'
miRNA:   3'- gCGC-CGGGCGCGGa---GGgG-------------GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 66511 0.66 0.26893
Target:  5'- gCGCGGUggaggCGCGCCgccuugcggUCCCCgGCCCgCu -3'
miRNA:   3'- -GCGCCGg----GCGCGGa--------GGGGGgCGGGgG- -5'
6514 3' -71 NC_001847.1 + 29460 0.66 0.26893
Target:  5'- cCGCGGCCgaaGCGCCgCCCgCgGCCg-- -3'
miRNA:   3'- -GCGCCGGg--CGCGGaGGGgGgCGGggg -5'
6514 3' -71 NC_001847.1 + 42168 0.66 0.280681
Target:  5'- uGUGGCUgCaCGCCgCCCgCCCGCCCgagCCg -3'
miRNA:   3'- gCGCCGG-GcGCGGaGGG-GGGCGGG---GG- -5'
6514 3' -71 NC_001847.1 + 9549 0.66 0.274168
Target:  5'- gCGUGcGCCaGCGCUgcagccgUCCagCCCGCCgCCCg -3'
miRNA:   3'- -GCGC-CGGgCGCGG-------AGGg-GGGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 112640 0.66 0.271248
Target:  5'- -cCGGCCCGcCGCCgCCaugagccacggccagCCuuGCCCCa -3'
miRNA:   3'- gcGCCGGGC-GCGGaGG---------------GGggCGGGGg -5'
6514 3' -71 NC_001847.1 + 84550 0.66 0.26893
Target:  5'- gCGgGGCgUGCGCCUCgUacaCgGCCUCCu -3'
miRNA:   3'- -GCgCCGgGCGCGGAGgGg--GgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 3212 0.66 0.274755
Target:  5'- uCGcCGGCgCaCGUGCCUCCgCgCCGCCgCg -3'
miRNA:   3'- -GC-GCCG-G-GCGCGGAGGgG-GGCGGgGg -5'
6514 3' -71 NC_001847.1 + 93142 0.66 0.280083
Target:  5'- gGCuGCCgGCGCC-CCCCgcgggaaaggcggCCGCgacgCCCCg -3'
miRNA:   3'- gCGcCGGgCGCGGaGGGG-------------GGCG----GGGG- -5'
6514 3' -71 NC_001847.1 + 21723 0.66 0.274755
Target:  5'- aCGCGGCgCCGUugUUCCCCCCgacgcuacGCUgCCg -3'
miRNA:   3'- -GCGCCG-GGCGcgGAGGGGGG--------CGGgGG- -5'
6514 3' -71 NC_001847.1 + 2586 0.66 0.26893
Target:  5'- gCGCGGCcgCCGCgGCCgcacgcgagCCCgCCGCgCCg -3'
miRNA:   3'- -GCGCCG--GGCG-CGGa--------GGGgGGCGgGGg -5'
6514 3' -71 NC_001847.1 + 107743 0.66 0.274755
Target:  5'- gGCGGCaacaGCGCC-CCCCCgaGCaaCCUCg -3'
miRNA:   3'- gCGCCGgg--CGCGGaGGGGGg-CG--GGGG- -5'
6514 3' -71 NC_001847.1 + 134969 0.66 0.279487
Target:  5'- gGgGGCCCcggGgGCCaagacgcagaaCCCCgGCCCCCc -3'
miRNA:   3'- gCgCCGGG---CgCGGag---------GGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 65509 0.66 0.280681
Target:  5'- gCGCGGCUgggacuCGCG-CUCUCCgCGCUCaCCg -3'
miRNA:   3'- -GCGCCGG------GCGCgGAGGGGgGCGGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.