miRNA display CGI


Results 1 - 20 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 103438 1.1 0.000133
Target:  5'- gCGCGGCCCGCGCCUCCCCCCGCCCCCg -3'
miRNA:   3'- -GCGCCGGGCGCGGAGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 625 1.1 0.000133
Target:  5'- gCGCGGCCCGCGCCUCCCCCCGCCCCCg -3'
miRNA:   3'- -GCGCCGGGCGCGGAGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 39387 0.9 0.004634
Target:  5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3'
miRNA:   3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5'
6514 3' -71 NC_001847.1 + 39414 0.9 0.004634
Target:  5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3'
miRNA:   3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5'
6514 3' -71 NC_001847.1 + 39441 0.9 0.004634
Target:  5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3'
miRNA:   3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5'
6514 3' -71 NC_001847.1 + 39468 0.9 0.004634
Target:  5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3'
miRNA:   3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5'
6514 3' -71 NC_001847.1 + 39495 0.9 0.004634
Target:  5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3'
miRNA:   3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5'
6514 3' -71 NC_001847.1 + 33072 0.87 0.008261
Target:  5'- gCGCGGCCCGCGCCUgCCCuuGCUgCCg -3'
miRNA:   3'- -GCGCCGGGCGCGGAgGGGggCGGgGG- -5'
6514 3' -71 NC_001847.1 + 61909 0.83 0.014707
Target:  5'- aGCGcGCCCGCGCCgccgCCCCCCuCCUCCg -3'
miRNA:   3'- gCGC-CGGGCGCGGa---GGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 103001 0.82 0.019362
Target:  5'- cCGgGGCCCcCGCCccCgCCCCCGCCCCCg -3'
miRNA:   3'- -GCgCCGGGcGCGGa-G-GGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 188 0.82 0.019362
Target:  5'- cCGgGGCCCcCGCCccCgCCCCCGCCCCCg -3'
miRNA:   3'- -GCgCCGGGcGCGGa-G-GGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 102241 0.81 0.021935
Target:  5'- cCGCGGcCCCG-GCUUCCCCgCCgGCCCCCg -3'
miRNA:   3'- -GCGCC-GGGCgCGGAGGGG-GG-CGGGGG- -5'
6514 3' -71 NC_001847.1 + 120029 0.81 0.022489
Target:  5'- aGCGGCCUagGC-CCUCCCCcgaCCGCCCCCu -3'
miRNA:   3'- gCGCCGGG--CGcGGAGGGG---GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 487 0.81 0.023639
Target:  5'- uGgGuGCCCGCGCCUCCgCgccugcugccggCCCGCCCCCa -3'
miRNA:   3'- gCgC-CGGGCGCGGAGG-G------------GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 102121 0.8 0.025472
Target:  5'- cCGC-GUCCGCGCCUCgCCCCgcgCGCCCCCc -3'
miRNA:   3'- -GCGcCGGGCGCGGAG-GGGG---GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 46861 0.8 0.025472
Target:  5'- gCGuCGGCCCagcaggcgaaGCG-CUCCCCCCGUCCCCg -3'
miRNA:   3'- -GC-GCCGGG----------CGCgGAGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 107210 0.8 0.026114
Target:  5'- cCGCGGCCCaggcgcuguccGCGuCCUccgcgCCCUCCGCCCCCu -3'
miRNA:   3'- -GCGCCGGG-----------CGC-GGA-----GGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 4397 0.8 0.026114
Target:  5'- cCGCGGCCCaggcgcuguccGCGuCCUccgcgCCCUCCGCCCCCu -3'
miRNA:   3'- -GCGCCGGG-----------CGC-GGA-----GGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 16467 0.8 0.026772
Target:  5'- uGCGGCCCG-GCCcaaCCCCCGCCCUg -3'
miRNA:   3'- gCGCCGGGCgCGGag-GGGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 78310 0.8 0.028138
Target:  5'- gGCGGCugggCCGCccCCUCCCCgCGCCCCCa -3'
miRNA:   3'- gCGCCG----GGCGc-GGAGGGGgGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.