miRNA display CGI


Results 1 - 20 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 5 0.72 0.110554
Target:  5'- cCGCGccGCgCCGCGCgggCCCCCUGCgaCCCCg -3'
miRNA:   3'- -GCGC--CG-GGCGCGga-GGGGGGCG--GGGG- -5'
6514 3' -71 NC_001847.1 + 76 0.72 0.102929
Target:  5'- gGCgGGCCCGgGCCcgcUCUgggCUCCGCCCCUg -3'
miRNA:   3'- gCG-CCGGGCgCGG---AGG---GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 115 0.75 0.060464
Target:  5'- gGCGcCCCGCGCC-CCggCCCCGCCCgCg -3'
miRNA:   3'- gCGCcGGGCGCGGaGG--GGGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 144 0.67 0.238139
Target:  5'- gCGCGGCCaucuUGCUUCCaaacucauuagcauaCCCCGCCCa- -3'
miRNA:   3'- -GCGCCGGgc--GCGGAGG---------------GGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 188 0.82 0.019362
Target:  5'- cCGgGGCCCcCGCCccCgCCCCCGCCCCCg -3'
miRNA:   3'- -GCgCCGGGcGCGGa-G-GGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 224 0.7 0.157194
Target:  5'- gGgGGCCCGaGCCcgggCCUCgCGCCCCg -3'
miRNA:   3'- gCgCCGGGCgCGGa---GGGGgGCGGGGg -5'
6514 3' -71 NC_001847.1 + 285 0.72 0.102929
Target:  5'- cCGcCGaGCCCgcgcggGCGCCgUCCCCgCGCCCCg -3'
miRNA:   3'- -GC-GC-CGGG------CGCGG-AGGGGgGCGGGGg -5'
6514 3' -71 NC_001847.1 + 329 0.69 0.180413
Target:  5'- uCGCGcuccacGCCCGCGUC-CCUCCCgggcuucgcGCCCCg -3'
miRNA:   3'- -GCGC------CGGGCGCGGaGGGGGG---------CGGGGg -5'
6514 3' -71 NC_001847.1 + 379 0.68 0.220921
Target:  5'- cCGCGcGCCgCGCGCCggaCCgCGCUCCg -3'
miRNA:   3'- -GCGC-CGG-GCGCGGaggGGgGCGGGGg -5'
6514 3' -71 NC_001847.1 + 487 0.81 0.023639
Target:  5'- uGgGuGCCCGCGCCUCCgCgccugcugccggCCCGCCCCCa -3'
miRNA:   3'- gCgC-CGGGCGCGGAGG-G------------GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 500 0.79 0.030315
Target:  5'- gGCGGCCgCGCGCCaacCCCCCUGUCCgCg -3'
miRNA:   3'- gCGCCGG-GCGCGGa--GGGGGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 558 0.68 0.216063
Target:  5'- gGCGGCggacgccagcgCCGCGUCUCCggcgccggguCCUgGCCCuCCg -3'
miRNA:   3'- gCGCCG-----------GGCGCGGAGG----------GGGgCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 625 1.1 0.000133
Target:  5'- gCGCGGCCCGCGCCUCCCCCCGCCCCCg -3'
miRNA:   3'- -GCGCCGGGCGCGGAGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 716 0.68 0.206158
Target:  5'- uGCcGCCguCGCGCCcCCUCCCucccuucccgcggGCCCCCc -3'
miRNA:   3'- gCGcCGG--GCGCGGaGGGGGG-------------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 884 0.79 0.031858
Target:  5'- gGCGGCCCGCGCCggggCCgCCgcggccgccggCCGCCgCCCg -3'
miRNA:   3'- gCGCCGGGCGCGGa---GG-GG-----------GGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 917 0.79 0.033478
Target:  5'- gGCGGaCCCG-GCCUUCCCaCCGCCgCCCu -3'
miRNA:   3'- gCGCC-GGGCgCGGAGGGG-GGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 986 0.75 0.060464
Target:  5'- gCGcCGGCCCGCaGCa-CCUUCUGCCCCCa -3'
miRNA:   3'- -GC-GCCGGGCG-CGgaGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 1003 0.69 0.184566
Target:  5'- gGCGGCaCGCG-CUCCaCCaggCCGCCgCCCg -3'
miRNA:   3'- gCGCCGgGCGCgGAGG-GG---GGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 1066 0.7 0.160867
Target:  5'- gGCGGCgCCGgGCUguucgcugCUCCCCGCCUg- -3'
miRNA:   3'- gCGCCG-GGCgCGGa-------GGGGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 1106 0.68 0.211296
Target:  5'- cCGCGGgCgGCGCCg-CCgCgGCCUCCa -3'
miRNA:   3'- -GCGCCgGgCGCGGagGGgGgCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.