miRNA display CGI


Results 1 - 20 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 135074 0.74 0.083729
Target:  5'- aGCgGGCCCGgGCCcgccgcgccgaaauuUCCgCCCC-CCCCCa -3'
miRNA:   3'- gCG-CCGGGCgCGG---------------AGG-GGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 135062 0.8 0.029571
Target:  5'- uCGCGcUCCGCGCCcaUCCcccaCCCCGCCCCCg -3'
miRNA:   3'- -GCGCcGGGCGCGG--AGG----GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 134969 0.66 0.279487
Target:  5'- gGgGGCCCcggGgGCCaagacgcagaaCCCCgGCCCCCc -3'
miRNA:   3'- gCgCCGGG---CgCGGag---------GGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 134919 0.66 0.286707
Target:  5'- gCGCgaGGCCCGgGCUcgggCCCCCgGgCgCCg -3'
miRNA:   3'- -GCG--CCGGGCgCGGa---GGGGGgCgGgGG- -5'
6514 3' -71 NC_001847.1 + 134861 0.66 0.286707
Target:  5'- gGC-GCCCGCGCgggCUCggcggCCCCCgggcucggGCCCCUg -3'
miRNA:   3'- gCGcCGGGCGCG---GAG-----GGGGG--------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 134717 0.7 0.153597
Target:  5'- cCGCcGCCgC-CGCC-CCCgCCCGCCCCg -3'
miRNA:   3'- -GCGcCGG-GcGCGGaGGG-GGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 134653 0.69 0.188804
Target:  5'- -uUGGCgCGCgGCCgCCCCgCCGCCgCCg -3'
miRNA:   3'- gcGCCGgGCG-CGGaGGGG-GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 134391 0.67 0.257579
Target:  5'- gGCGGgCCG-GCCUCgCCCUagggggGCCCgCg -3'
miRNA:   3'- gCGCCgGGCgCGGAGgGGGG------CGGGgG- -5'
6514 3' -71 NC_001847.1 + 134247 0.7 0.153597
Target:  5'- gGCGGCCgGCgGCCgcggcggCCCCggcgcgggCCGCCgCCg -3'
miRNA:   3'- gCGCCGGgCG-CGGa------GGGG--------GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 134139 0.67 0.246624
Target:  5'- gGCGGCCugguggagcgCGUGCCgccgCCggcggcggaagCCCCGCCggCCCg -3'
miRNA:   3'- gCGCCGG----------GCGCGGa---GG-----------GGGGCGG--GGG- -5'
6514 3' -71 NC_001847.1 + 133710 0.7 0.164617
Target:  5'- gGUGGCCaCGCGCCUgggCCCGCCaCCg -3'
miRNA:   3'- gCGCCGG-GCGCGGAgggGGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 133219 0.73 0.098124
Target:  5'- cCGCGcGCCgGCuaaGCCUCgCCaCCUGCCCCg -3'
miRNA:   3'- -GCGC-CGGgCG---CGGAG-GG-GGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 133046 0.74 0.077122
Target:  5'- uCGCGGCCCGcCGCCgcgcgggCCCCgcggggcgcUCGCCgCCa -3'
miRNA:   3'- -GCGCCGGGC-GCGGa------GGGG---------GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 132967 0.71 0.121545
Target:  5'- gCGCGGCUCGCGgaccacccgcuCUUCCCCgaGCCCUg -3'
miRNA:   3'- -GCGCCGGGCGC-----------GGAGGGGggCGGGGg -5'
6514 3' -71 NC_001847.1 + 132929 0.67 0.246624
Target:  5'- cCGCGGCgCUgGCgGCCUaCUgCCGCCCCg -3'
miRNA:   3'- -GCGCCG-GG-CG-CGGAgGGgGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 132877 0.67 0.259257
Target:  5'- gGCGGCUuccgccgCGUGCCgCCCggggacuaccacacgCCCGCgCCCa -3'
miRNA:   3'- gCGCCGG-------GCGCGGaGGG---------------GGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 132842 0.67 0.241292
Target:  5'- uGgGGCCCaUGCCgCCCggcggcCCCGCCgCCg -3'
miRNA:   3'- gCgCCGGGcGCGGaGGG------GGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 132808 0.66 0.292835
Target:  5'- gCGCGGCgggaGcCGCCgCUgCCCGCCCgCg -3'
miRNA:   3'- -GCGCCGgg--C-GCGGaGGgGGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 132712 0.67 0.236057
Target:  5'- gGCGGCCC-UGCCggCCgCCGCgggggCCCCu -3'
miRNA:   3'- gCGCCGGGcGCGGagGGgGGCG-----GGGG- -5'
6514 3' -71 NC_001847.1 + 132568 0.67 0.263205
Target:  5'- cCGCGGCggCCGCGCaggCgCCCgCGCCgaagacagCCCg -3'
miRNA:   3'- -GCGCCG--GGCGCGga-G-GGGgGCGG--------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.