miRNA display CGI


Results 21 - 40 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 1158 0.67 0.263205
Target:  5'- cCGauGCCgCGCGCgCUCCCa--GCCCCg -3'
miRNA:   3'- -GCgcCGG-GCGCG-GAGGGgggCGGGGg -5'
6514 3' -71 NC_001847.1 + 1295 0.67 0.236057
Target:  5'- gGUGGCUgGcCGCCUCgCCCUccacgaaguccgGCuCCCCg -3'
miRNA:   3'- gCGCCGGgC-GCGGAGgGGGG------------CG-GGGG- -5'
6514 3' -71 NC_001847.1 + 1419 0.66 0.286707
Target:  5'- aCGCGGcCCCGCGCC-CCgCCaggcacuauuUGCgCUCg -3'
miRNA:   3'- -GCGCC-GGGCGCGGaGGgGG----------GCGgGGG- -5'
6514 3' -71 NC_001847.1 + 1532 0.72 0.105414
Target:  5'- gCGCGcGCuuGUGCCgCCCaagCCCGCCCgCCc -3'
miRNA:   3'- -GCGC-CGggCGCGGaGGG---GGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 2230 0.66 0.299065
Target:  5'- uCGCGGCCguggaacaugaGCGUCUCCCaggugacgcggCgGCCCUCg -3'
miRNA:   3'- -GCGCCGGg----------CGCGGAGGGg----------GgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 2434 0.77 0.047312
Target:  5'- cCGCGGCggccggcagggCCGcCGCCUCgccgUCCCCGUCCCCg -3'
miRNA:   3'- -GCGCCG-----------GGC-GCGGAG----GGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 2471 0.7 0.160867
Target:  5'- aGCGGgCgGCGgCg-CCCCCGCCgCCg -3'
miRNA:   3'- gCGCCgGgCGCgGagGGGGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 2586 0.66 0.26893
Target:  5'- gCGCGGCcgCCGCgGCCgcacgcgagCCCgCCGCgCCg -3'
miRNA:   3'- -GCGCCG--GGCG-CGGa--------GGGgGGCGgGGg -5'
6514 3' -71 NC_001847.1 + 2671 0.7 0.14325
Target:  5'- gGCGGCUCG-GCCggcaucggcucgUCCUCCgCGCCCuCCa -3'
miRNA:   3'- gCGCCGGGCgCGG------------AGGGGG-GCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 2692 0.67 0.263205
Target:  5'- cCGgGuccGCCCGCGgCg-CCCCgGCCCUCa -3'
miRNA:   3'- -GCgC---CGGGCGCgGagGGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 2762 0.73 0.095801
Target:  5'- gGCGGCgCCgGCGCCggcgCCCCCgccggcgGCCUCCa -3'
miRNA:   3'- gCGCCG-GG-CGCGGa---GGGGGg------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 2809 0.69 0.172354
Target:  5'- gCGCGGCcgccagCCGCGCCggcaCCUCCGCCg-- -3'
miRNA:   3'- -GCGCCG------GGCGCGGag--GGGGGCGGggg -5'
6514 3' -71 NC_001847.1 + 2925 0.7 0.157194
Target:  5'- -aCGGUCCGCGCCgCCagcgcggCCGCCUCCa -3'
miRNA:   3'- gcGCCGGGCGCGGaGGgg-----GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 3099 0.68 0.225872
Target:  5'- cCGCGGCCgGCagGCCgcggCCCgCCGCggCCg -3'
miRNA:   3'- -GCGCCGGgCG--CGGa---GGGgGGCGggGG- -5'
6514 3' -71 NC_001847.1 + 3212 0.66 0.274755
Target:  5'- uCGcCGGCgCaCGUGCCUCCgCgCCGCCgCg -3'
miRNA:   3'- -GC-GCCG-G-GCGCGGAGGgG-GGCGGgGg -5'
6514 3' -71 NC_001847.1 + 3659 0.68 0.206621
Target:  5'- aGC-GCCgCGUacuGCUUCCCCgCGUCCCCc -3'
miRNA:   3'- gCGcCGG-GCG---CGGAGGGGgGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 3928 0.66 0.280083
Target:  5'- uGCGcGCCCGCGCUggcgCCgCggcggggggggcgCCGUCUCCg -3'
miRNA:   3'- gCGC-CGGGCGCGGa---GGgG-------------GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 3997 0.76 0.056185
Target:  5'- gCGCGGCCCcgcgggGCGCCgggCCCggcgCCCGCCUCUc -3'
miRNA:   3'- -GCGCCGGG------CGCGGa--GGG----GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 4090 0.67 0.246624
Target:  5'- -uCGGCCUcaGCGUcggcgucggugCUCCCCUcccgggccuCGCCCCCa -3'
miRNA:   3'- gcGCCGGG--CGCG-----------GAGGGGG---------GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 4234 0.7 0.153597
Target:  5'- -cUGGCCCcgagggcacCGCCgCCCCCCGCCUCa -3'
miRNA:   3'- gcGCCGGGc--------GCGGaGGGGGGCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.