miRNA display CGI


Results 21 - 40 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 131992 0.69 0.168445
Target:  5'- gGCGGCCCGCcgcgccGCCggcgCCgCCgGgCUCCCg -3'
miRNA:   3'- gCGCCGGGCG------CGGa---GGgGGgC-GGGGG- -5'
6514 3' -71 NC_001847.1 + 131877 0.69 0.176342
Target:  5'- uCGcCGGCCgcgcgGCGCCggCgCCCCUGCCgCCg -3'
miRNA:   3'- -GC-GCCGGg----CGCGGa-G-GGGGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 131787 0.7 0.157194
Target:  5'- uGCGGCgCGCGUacgCCCCCaugGCCuaCCCg -3'
miRNA:   3'- gCGCCGgGCGCGga-GGGGGg--CGG--GGG- -5'
6514 3' -71 NC_001847.1 + 131721 0.68 0.215582
Target:  5'- -cUGGgCUGCGCCUggCCCCCCGggcugcuCUCCCg -3'
miRNA:   3'- gcGCCgGGCGCGGA--GGGGGGC-------GGGGG- -5'
6514 3' -71 NC_001847.1 + 131681 0.7 0.157194
Target:  5'- gCGcCGGCgCGCGCUugcugucgacuUCCgCCUCGaCCCCCu -3'
miRNA:   3'- -GC-GCCGgGCGCGG-----------AGG-GGGGC-GGGGG- -5'
6514 3' -71 NC_001847.1 + 131325 0.7 0.164617
Target:  5'- gCGUGGCCCggcagcGCGCCg-CCgCCGCCCggCCg -3'
miRNA:   3'- -GCGCCGGG------CGCGGagGGgGGCGGG--GG- -5'
6514 3' -71 NC_001847.1 + 131263 0.68 0.220921
Target:  5'- cCGCGGCgCCGCGCgaCgggCCgCCGCCgCUg -3'
miRNA:   3'- -GCGCCG-GGCGCGgaG---GGgGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 131203 0.68 0.197537
Target:  5'- uGUGGgUCGCGCUcgCCgCCCGCUgCCa -3'
miRNA:   3'- gCGCCgGGCGCGGa-GGgGGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 131193 0.7 0.14325
Target:  5'- cCGcCGGagaCgGCGCC-CCCCCCGCCgCg -3'
miRNA:   3'- -GC-GCCg--GgCGCGGaGGGGGGCGGgGg -5'
6514 3' -71 NC_001847.1 + 131159 0.78 0.039811
Target:  5'- gCGgGGCCgCGCGCCcgggCCCCCggCGCCCUCg -3'
miRNA:   3'- -GCgCCGG-GCGCGGa---GGGGG--GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 131120 0.7 0.160867
Target:  5'- aGCGGCCCcgcgagaggcggGCGCCgggCCCggCGCCCCn -3'
miRNA:   3'- gCGCCGGG------------CGCGGa--GGGggGCGGGGg -5'
6514 3' -71 NC_001847.1 + 130959 0.66 0.305397
Target:  5'- gCGCGGCCCacgggcGCGCggCCCaaaacaaggCCCGCUCgCu -3'
miRNA:   3'- -GCGCCGGG------CGCGgaGGG---------GGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 130696 0.67 0.246624
Target:  5'- gCGCGGCCuuucacggcgugCGCGUUUCCCUgcggcgcgcgCUGCCgCCg -3'
miRNA:   3'- -GCGCCGG------------GCGCGGAGGGG----------GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 130313 0.72 0.107955
Target:  5'- uGaCGGCCgGC-CgaCCCaCCCGCCCCCc -3'
miRNA:   3'- gC-GCCGGgCGcGgaGGG-GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 130278 0.77 0.048491
Target:  5'- cCGCuGCCCGcCGCCcCCCCCCcUCCCCu -3'
miRNA:   3'- -GCGcCGGGC-GCGGaGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 130163 0.71 0.136711
Target:  5'- cCGCGGCcgCCGCaGCC-CCagCUGCCCCCc -3'
miRNA:   3'- -GCGCCG--GGCG-CGGaGGggGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 130120 0.69 0.176342
Target:  5'- gGUcGCCCGaGCUUCCCCuCCGCgCCgCCg -3'
miRNA:   3'- gCGcCGGGCgCGGAGGGG-GGCG-GG-GG- -5'
6514 3' -71 NC_001847.1 + 129944 0.67 0.235539
Target:  5'- uCGCGGCgcgcuugCCGCGCUcgcggcgcuguUCCCCgaaaUCGCCgCCg -3'
miRNA:   3'- -GCGCCG-------GGCGCGG-----------AGGGG----GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 129877 0.68 0.216063
Target:  5'- aCGUGGaCUUuCGCCUCaagcgCCCCCuCCCCCg -3'
miRNA:   3'- -GCGCC-GGGcGCGGAG-----GGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 129849 0.7 0.157194
Target:  5'- uCGCcGUCgCGCucGCCguaCCCCCGUCCCCg -3'
miRNA:   3'- -GCGcCGG-GCG--CGGag-GGGGGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.