miRNA display CGI


Results 21 - 40 of 685 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 54606 0.66 0.299065
Target:  5'- gCGCGcGCCCGCGCCgaugCCgaCgUGCgCCg -3'
miRNA:   3'- -GCGC-CGGGCGCGGa---GGg-GgGCGgGGg -5'
6514 3' -71 NC_001847.1 + 17814 0.66 0.299065
Target:  5'- gGgGGCgaG-GCCgCCCCCCGCCgCUa -3'
miRNA:   3'- gCgCCGggCgCGGaGGGGGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 90898 0.66 0.299065
Target:  5'- aGUcGCCgGCGCgCUCagCCCCaCGCCCgCa -3'
miRNA:   3'- gCGcCGGgCGCG-GAG--GGGG-GCGGGgG- -5'
6514 3' -71 NC_001847.1 + 2230 0.66 0.299065
Target:  5'- uCGCGGCCguggaacaugaGCGUCUCCCaggugacgcggCgGCCCUCg -3'
miRNA:   3'- -GCGCCGGg----------CGCGGAGGGg----------GgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 76910 0.66 0.299065
Target:  5'- gGcCGaGCUCGCGCgCaCgUCCCGCCUCCa -3'
miRNA:   3'- gC-GC-CGGGCGCG-GaGgGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 102258 0.66 0.299065
Target:  5'- gCGCGGCgCGCaCCgugCCCUCCaGCgCCa -3'
miRNA:   3'- -GCGCCGgGCGcGGa--GGGGGG-CGgGGg -5'
6514 3' -71 NC_001847.1 + 14454 0.66 0.299065
Target:  5'- gCGCGGCCgcgcugcucggCGUGCgCUCCaaCgCCGUCCCg -3'
miRNA:   3'- -GCGCCGG-----------GCGCG-GAGG--GgGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 125021 0.66 0.298437
Target:  5'- gGCcgGGCCCGCucGCCgcgaaggcggcuuUCCCCgCCGCUugugcuCCCg -3'
miRNA:   3'- gCG--CCGGGCG--CGG-------------AGGGG-GGCGG------GGG- -5'
6514 3' -71 NC_001847.1 + 103297 0.66 0.297185
Target:  5'- gGCGaGCCCggGCGCgcgaacguagggucCUCgCaCUCUGCCCCCg -3'
miRNA:   3'- gCGC-CGGG--CGCG--------------GAG-G-GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 66656 0.66 0.295315
Target:  5'- gCGCGGCgccaacucuagcaugCC-CGUCUUcaaCCCUCGCCUCCa -3'
miRNA:   3'- -GCGCCG---------------GGcGCGGAG---GGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 118504 0.66 0.292835
Target:  5'- gCGgGGCCCcgacggcaaaGcCGCCgCgCCCC-CCCCCa -3'
miRNA:   3'- -GCgCCGGG----------C-GCGGaGgGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 97578 0.66 0.292835
Target:  5'- aGCGGCCagcgccgcCGCGUCUUCCgaagggCCGCCCg- -3'
miRNA:   3'- gCGCCGG--------GCGCGGAGGGg-----GGCGGGgg -5'
6514 3' -71 NC_001847.1 + 78838 0.66 0.292835
Target:  5'- uCGCGGCCCGcCGCgCgacgCCgCagaCUGCUUCCa -3'
miRNA:   3'- -GCGCCGGGC-GCG-Ga---GG-Gg--GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 132808 0.66 0.292835
Target:  5'- gCGCGGCgggaGcCGCCgCUgCCCGCCCgCg -3'
miRNA:   3'- -GCGCCGgg--C-GCGGaGGgGGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 21733 0.66 0.292835
Target:  5'- gCGCgGGCCgGCGCCggCCCgCGCgCgCg -3'
miRNA:   3'- -GCG-CCGGgCGCGGagGGGgGCGgGgG- -5'
6514 3' -71 NC_001847.1 + 75285 0.66 0.292835
Target:  5'- gCGCGGCCCucggcgaccGCGCCUggCCggUGCCCCg -3'
miRNA:   3'- -GCGCCGGG---------CGCGGAggGGg-GCGGGGg -5'
6514 3' -71 NC_001847.1 + 98299 0.66 0.292835
Target:  5'- cCGCcGCCgaGCGCacgUCCgCCaGCCCCCa -3'
miRNA:   3'- -GCGcCGGg-CGCGg--AGGgGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 93933 0.66 0.292835
Target:  5'- uGCGGCauucucgcgauaCUGCGCCUUUUCUgggCGCCCUCu -3'
miRNA:   3'- gCGCCG------------GGCGCGGAGGGGG---GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 124546 0.66 0.292835
Target:  5'- gCGCgGGCCgGCGCCggCCCgCGCgCgCg -3'
miRNA:   3'- -GCG-CCGGgCGCGGagGGGgGCGgGgG- -5'
6514 3' -71 NC_001847.1 + 38676 0.66 0.292835
Target:  5'- cCGCcGCCCGCaaGCCUggUCUCCgcagCGCCUCCa -3'
miRNA:   3'- -GCGcCGGGCG--CGGA--GGGGG----GCGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.