miRNA display CGI


Results 41 - 60 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 93933 0.66 0.292835
Target:  5'- uGCGGCauucucgcgauaCUGCGCCUUUUCUgggCGCCCUCu -3'
miRNA:   3'- gCGCCG------------GGCGCGGAGGGGG---GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 97578 0.66 0.292835
Target:  5'- aGCGGCCagcgccgcCGCGUCUUCCgaagggCCGCCCg- -3'
miRNA:   3'- gCGCCGG--------GCGCGGAGGGg-----GGCGGGgg -5'
6514 3' -71 NC_001847.1 + 60023 0.66 0.287315
Target:  5'- gCGgGGCCCGgGCCUUCUCgggcaagcgccggggCGCCgCCg -3'
miRNA:   3'- -GCgCCGGGCgCGGAGGGGg--------------GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 134919 0.66 0.286707
Target:  5'- gCGCgaGGCCCGgGCUcgggCCCCCgGgCgCCg -3'
miRNA:   3'- -GCG--CCGGGCgCGGa---GGGGGgCgGgGG- -5'
6514 3' -71 NC_001847.1 + 90416 0.66 0.286707
Target:  5'- gGCGGgCCacgaggcgGCGCC-CUUCCCGCUaCCCu -3'
miRNA:   3'- gCGCCgGG--------CGCGGaGGGGGGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 45568 0.66 0.286707
Target:  5'- gGCGGCgUCGCG-CUCCa--CGCCCUCg -3'
miRNA:   3'- gCGCCG-GGCGCgGAGGgggGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 134861 0.66 0.286707
Target:  5'- gGC-GCCCGCGCgggCUCggcggCCCCCgggcucggGCCCCUg -3'
miRNA:   3'- gCGcCGGGCGCG---GAG-----GGGGG--------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 1419 0.66 0.286707
Target:  5'- aCGCGGcCCCGCGCC-CCgCCaggcacuauuUGCgCUCg -3'
miRNA:   3'- -GCGCC-GGGCGCGGaGGgGG----------GCGgGGG- -5'
6514 3' -71 NC_001847.1 + 80549 0.66 0.286707
Target:  5'- gCGCGGgCgCGCGCCg-CCagCGCCgCCCa -3'
miRNA:   3'- -GCGCCgG-GCGCGGagGGggGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 32048 0.66 0.286707
Target:  5'- gGC-GCCCGCGCgggCUCggcggCCCCCgggcucggGCCCCUg -3'
miRNA:   3'- gCGcCGGGCGCG---GAG-----GGGGG--------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 121108 0.66 0.286707
Target:  5'- aGCGGCUCGCgGCCga-CCagCGCCUCUa -3'
miRNA:   3'- gCGCCGGGCG-CGGaggGGg-GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 123963 0.66 0.286707
Target:  5'- gCGCGGaCCaGCGgCagCCCCaGCUCCCg -3'
miRNA:   3'- -GCGCC-GGgCGCgGagGGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 32106 0.66 0.286707
Target:  5'- gCGCgaGGCCCGgGCUcgggCCCCCgGgCgCCg -3'
miRNA:   3'- -GCG--CCGGGCgCGGa---GGGGGgCgGgGG- -5'
6514 3' -71 NC_001847.1 + 81367 0.66 0.286707
Target:  5'- gGCGGCUgcggUGCuGCCg-CCCUCGCCgCCu -3'
miRNA:   3'- gCGCCGG----GCG-CGGagGGGGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 107372 0.66 0.2861
Target:  5'- cCGCGcaguuuauuguacGCCC-CGCacagCCCCCCGCCgcaaCCg -3'
miRNA:   3'- -GCGC-------------CGGGcGCGga--GGGGGGCGGg---GG- -5'
6514 3' -71 NC_001847.1 + 97842 0.66 0.283079
Target:  5'- gCGCGGgCUGCGCgcgccuuauacaaugCUCCagucgaCgCCGCCCCg -3'
miRNA:   3'- -GCGCCgGGCGCG---------------GAGGg-----G-GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 57085 0.66 0.280681
Target:  5'- gGCGGCCagcgcuGCGCUggaCCgCCgCGCCgCCg -3'
miRNA:   3'- gCGCCGGg-----CGCGGa--GGgGG-GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 127052 0.66 0.280681
Target:  5'- aCGUgGGUCgGCGCCUCgCCgUgguggacagGCCCCCc -3'
miRNA:   3'- -GCG-CCGGgCGCGGAGgGGgG---------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 65509 0.66 0.280681
Target:  5'- gCGCGGCUgggacuCGCG-CUCUCCgCGCUCaCCg -3'
miRNA:   3'- -GCGCCGG------GCGCgGAGGGGgGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 124400 0.66 0.280681
Target:  5'- aGgGGgCCGCGggg--CCCCGCCCCCc -3'
miRNA:   3'- gCgCCgGGCGCggaggGGGGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.