Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6514 | 5' | -50 | NC_001847.1 | + | 42960 | 0.66 | 0.9954 |
Target: 5'- cGCGcgGggGggGcGGGCCGCcggccgGCcCGGGu -3' miRNA: 3'- -UGUuaCuuCuuU-CUCGGCG------UGaGCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 56181 | 0.75 | 0.751055 |
Target: 5'- uGCAucgugGAAGAAguGGAGgCGCGCUCGGu -3' miRNA: 3'- -UGUua---CUUCUU--UCUCgGCGUGAGCCu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 59550 | 0.68 | 0.9717 |
Target: 5'- gGCGGUGggGGcggcGGGGGCgGUGCcggCGGAa -3' miRNA: 3'- -UGUUACuuCU----UUCUCGgCGUGa--GCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 65091 | 0.68 | 0.979633 |
Target: 5'- gGCAGUGcuaagcugcGAgcGAGCCGCgGCUCGGc -3' miRNA: 3'- -UGUUACuu-------CUuuCUCGGCG-UGAGCCu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 65096 | 0.67 | 0.983914 |
Target: 5'- gGCGAUcGAGAA--GGCCGCGCUCa-- -3' miRNA: 3'- -UGUUAcUUCUUucUCGGCGUGAGccu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 65426 | 0.68 | 0.979633 |
Target: 5'- uGCuccgGGAGgcGGcAGCCGCGCgccgCGGAc -3' miRNA: 3'- -UGuua-CUUCuuUC-UCGGCGUGa---GCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 66504 | 0.72 | 0.892089 |
Target: 5'- gGCGGUGAAGuuugggcuGGAGCUGCGCggcUGGGg -3' miRNA: 3'- -UGUUACUUCuu------UCUCGGCGUGa--GCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 67002 | 0.69 | 0.953913 |
Target: 5'- gGCGccGGAGAAGGGGCagacgCGCGCUCGc- -3' miRNA: 3'- -UGUuaCUUCUUUCUCG-----GCGUGAGCcu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 69101 | 0.66 | 0.993744 |
Target: 5'- cGCGcgGAcGGgcGGGCCGCGuuCUCGGc -3' miRNA: 3'- -UGUuaCUuCUuuCUCGGCGU--GAGCCu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 69681 | 0.66 | 0.9954 |
Target: 5'- gGCAGcGuuGGGcgcGGGGCCgGCGCUCGGu -3' miRNA: 3'- -UGUUaCuuCUU---UCUCGG-CGUGAGCCu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 73117 | 0.66 | 0.992753 |
Target: 5'- -gGGUGgcGGAGGuAGCCGCcguGCUCGcGGa -3' miRNA: 3'- ugUUACuuCUUUC-UCGGCG---UGAGC-CU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 75466 | 0.66 | 0.992753 |
Target: 5'- gACcggGggGGAGGGGCCagagcGCACgggCGGGc -3' miRNA: 3'- -UGuuaCuuCUUUCUCGG-----CGUGa--GCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 76695 | 0.67 | 0.983914 |
Target: 5'- uGCuuuGUGGcgcGGGAGGAGgCGCGC-CGGGa -3' miRNA: 3'- -UGu--UACU---UCUUUCUCgGCGUGaGCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 81110 | 0.66 | 0.992647 |
Target: 5'- cCAGUGGcugcuccAGAgcGcGCCGCGCgUCGGAc -3' miRNA: 3'- uGUUACU-------UCUuuCuCGGCGUG-AGCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 83393 | 0.68 | 0.979633 |
Target: 5'- uCGAUGuccuccuuGGAGAGcAGCCGCGC-CGGc -3' miRNA: 3'- uGUUACu-------UCUUUC-UCGGCGUGaGCCu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 85514 | 0.67 | 0.990396 |
Target: 5'- cGCGAgGAAGAccAGGGCCGU-UUCGGGa -3' miRNA: 3'- -UGUUaCUUCUu-UCUCGGCGuGAGCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 90331 | 0.69 | 0.965306 |
Target: 5'- cCGAcUGggGcgcGGuGCCGCGCUCGGc -3' miRNA: 3'- uGUU-ACuuCuu-UCuCGGCGUGAGCCu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 92101 | 0.67 | 0.98578 |
Target: 5'- -gGAUGAGGAAGGAGUaguuggaguagCGCACcuuuUCGGc -3' miRNA: 3'- ugUUACUUCUUUCUCG-----------GCGUG----AGCCu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 93471 | 0.67 | 0.990396 |
Target: 5'- aGCAGgaucuccuUGAAGAGccgcGuGCCGCGCgUCGGGu -3' miRNA: 3'- -UGUU--------ACUUCUUu---CuCGGCGUG-AGCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 94666 | 0.67 | 0.987476 |
Target: 5'- --cGUGAcGGAAGAGCaccuCGCGCUCGuGGa -3' miRNA: 3'- uguUACUuCUUUCUCG----GCGUGAGC-CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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