miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 5' -50 NC_001847.1 + 659 1.09 0.008529
Target:  5'- gACAAUGAAGAAAGAGCCGCACUCGGAc -3'
miRNA:   3'- -UGUUACUUCUUUCUCGGCGUGAGCCU- -5'
6514 5' -50 NC_001847.1 + 2492 0.68 0.981868
Target:  5'- cGCcguGUGAAGAcgucgcGAGGGCCGC-CUCGc- -3'
miRNA:   3'- -UGu--UACUUCU------UUCUCGGCGuGAGCcu -5'
6514 5' -50 NC_001847.1 + 4060 0.66 0.993744
Target:  5'- cACGGUGAacacgguaccgAGgcGGuugcuGCCGCACUUGGu -3'
miRNA:   3'- -UGUUACU-----------UCuuUCu----CGGCGUGAGCCu -5'
6514 5' -50 NC_001847.1 + 6839 0.66 0.992753
Target:  5'- aGCGGggaguugGggGggGGGGCgGCGCUUGc- -3'
miRNA:   3'- -UGUUa------CuuCuuUCUCGgCGUGAGCcu -5'
6514 5' -50 NC_001847.1 + 7387 0.76 0.688236
Target:  5'- gACAGUGGAGGAcGuGgCGCGCUCGGc -3'
miRNA:   3'- -UGUUACUUCUUuCuCgGCGUGAGCCu -5'
6514 5' -50 NC_001847.1 + 8631 0.66 0.993744
Target:  5'- ----cGggGGAGcGGCCGCugcggACUCGGGc -3'
miRNA:   3'- uguuaCuuCUUUcUCGGCG-----UGAGCCU- -5'
6514 5' -50 NC_001847.1 + 10878 0.72 0.887802
Target:  5'- gGCGGgaggggGAAGggGGAGCCGgagcuuuggcccgcuCGCUCGGc -3'
miRNA:   3'- -UGUUa-----CUUCuuUCUCGGC---------------GUGAGCCu -5'
6514 5' -50 NC_001847.1 + 11222 0.68 0.979633
Target:  5'- -aAGUGggGccucuggugGAGGAGCCGCcguuUUCGGGa -3'
miRNA:   3'- ugUUACuuC---------UUUCUCGGCGu---GAGCCU- -5'
6514 5' -50 NC_001847.1 + 11667 0.73 0.827873
Target:  5'- gGCGGUGAAGggGGcGCUGCA-UCGGc -3'
miRNA:   3'- -UGUUACUUCuuUCuCGGCGUgAGCCu -5'
6514 5' -50 NC_001847.1 + 20270 0.7 0.929792
Target:  5'- gACGGcGAGGucGGcGCCGCGCgUCGGAa -3'
miRNA:   3'- -UGUUaCUUCuuUCuCGGCGUG-AGCCU- -5'
6514 5' -50 NC_001847.1 + 21927 0.67 0.983914
Target:  5'- gGCGAggcgGAGGAGAGGaCCGCgGCUCGcGGc -3'
miRNA:   3'- -UGUUa---CUUCUUUCUcGGCG-UGAGC-CU- -5'
6514 5' -50 NC_001847.1 + 24105 0.7 0.949613
Target:  5'- gGCGcgGGucccAGGGCuCGCACUCGGGc -3'
miRNA:   3'- -UGUuaCUucuuUCUCG-GCGUGAGCCU- -5'
6514 5' -50 NC_001847.1 + 27974 0.66 0.994624
Target:  5'- cGCGGUGGAGGc--GGCCGCgGC-CGGGg -3'
miRNA:   3'- -UGUUACUUCUuucUCGGCG-UGaGCCU- -5'
6514 5' -50 NC_001847.1 + 30436 0.66 0.993744
Target:  5'- gGCGcgGAGGcgccGGGGCUGCACgaggUGGGc -3'
miRNA:   3'- -UGUuaCUUCuu--UCUCGGCGUGa---GCCU- -5'
6514 5' -50 NC_001847.1 + 31707 0.69 0.953913
Target:  5'- gGCGG-GggGAGGcgcGGGCCGCGCgccgcugCGGAg -3'
miRNA:   3'- -UGUUaCuuCUUU---CUCGGCGUGa------GCCU- -5'
6514 5' -50 NC_001847.1 + 32785 0.71 0.924171
Target:  5'- --uGUGggGGGAGGGCCGgGggCGGAc -3'
miRNA:   3'- uguUACuuCUUUCUCGGCgUgaGCCU- -5'
6514 5' -50 NC_001847.1 + 32906 0.72 0.861829
Target:  5'- gGCGggGAAGccGGGGCCGCGgaCGGGa -3'
miRNA:   3'- -UGUuaCUUCuuUCUCGGCGUgaGCCU- -5'
6514 5' -50 NC_001847.1 + 33880 0.73 0.831421
Target:  5'- gGCAGUGAGGAGGGAcgaggggagcgccggGCCagGCuGCUCGGGg -3'
miRNA:   3'- -UGUUACUUCUUUCU---------------CGG--CG-UGAGCCU- -5'
6514 5' -50 NC_001847.1 + 34660 0.67 0.98578
Target:  5'- cGCGccGAGGggGcGGCCGCGCagCGGc -3'
miRNA:   3'- -UGUuaCUUCuuUcUCGGCGUGa-GCCu -5'
6514 5' -50 NC_001847.1 + 41457 0.66 0.994624
Target:  5'- --cAUGAaccGGAacGAGAGCUGCACgcgCGGc -3'
miRNA:   3'- uguUACU---UCU--UUCUCGGCGUGa--GCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.