miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 5' -50 NC_001847.1 + 134520 0.69 0.953913
Target:  5'- gGCGG-GggGAGGcgcGGGCCGCGCgccgcugCGGAg -3'
miRNA:   3'- -UGUUaCuuCUUU---CUCGGCGUGa------GCCU- -5'
6514 5' -50 NC_001847.1 + 130787 0.66 0.994624
Target:  5'- cGCGGUGGAGGc--GGCCGCgGC-CGGGg -3'
miRNA:   3'- -UGUUACUUCUuucUCGGCG-UGaGCCU- -5'
6514 5' -50 NC_001847.1 + 126918 0.7 0.949613
Target:  5'- gGCGcgGGucccAGGGCuCGCACUCGGGc -3'
miRNA:   3'- -UGUuaCUucuuUCUCG-GCGUGAGCCU- -5'
6514 5' -50 NC_001847.1 + 124740 0.66 0.992753
Target:  5'- gGCGAggcGGAGAGAGGaCCGCgGCUCGcGGg -3'
miRNA:   3'- -UGUUa--CUUCUUUCUcGGCG-UGAGC-CU- -5'
6514 5' -50 NC_001847.1 + 122399 0.69 0.953913
Target:  5'- cGCGAaGAAGGcgcuGGGCCGCACcCGGc -3'
miRNA:   3'- -UGUUaCUUCUuu--CUCGGCGUGaGCCu -5'
6514 5' -50 NC_001847.1 + 116453 0.66 0.99164
Target:  5'- gGCGGUGAcGc--GGGCCGUGCUgCGGGg -3'
miRNA:   3'- -UGUUACUuCuuuCUCGGCGUGA-GCCU- -5'
6514 5' -50 NC_001847.1 + 115914 0.7 0.945053
Target:  5'- gACGGgaucGAAGggGGGGCUGCcgUCGGGa -3'
miRNA:   3'- -UGUUa---CUUCuuUCUCGGCGugAGCCU- -5'
6514 5' -50 NC_001847.1 + 115057 0.67 0.98578
Target:  5'- aGCGAUGGcc---GGGCCGCGCcgCGGGa -3'
miRNA:   3'- -UGUUACUucuuuCUCGGCGUGa-GCCU- -5'
6514 5' -50 NC_001847.1 + 113691 0.72 0.887802
Target:  5'- gGCGGgaggggGAAGggGGAGCCGgagcuuuggcccgcuCGCUCGGc -3'
miRNA:   3'- -UGUUa-----CUUCuuUCUCGGC---------------GUGAGCCu -5'
6514 5' -50 NC_001847.1 + 109652 0.66 0.992753
Target:  5'- aGCGGggaguugGggGggGGGGCgGCGCUUGc- -3'
miRNA:   3'- -UGUUa------CuuCuuUCUCGgCGUGAGCcu -5'
6514 5' -50 NC_001847.1 + 103472 1.09 0.008529
Target:  5'- gACAAUGAAGAAAGAGCCGCACUCGGAc -3'
miRNA:   3'- -UGUUACUUCUUUCUCGGCGUGAGCCU- -5'
6514 5' -50 NC_001847.1 + 96880 0.71 0.912129
Target:  5'- cGCGcUGggGAGGGAccGCCGUGCUCGc- -3'
miRNA:   3'- -UGUuACuuCUUUCU--CGGCGUGAGCcu -5'
6514 5' -50 NC_001847.1 + 96266 0.83 0.347785
Target:  5'- gGCAAUGGcggggccGGAAccGGGGCCGUACUCGGGg -3'
miRNA:   3'- -UGUUACU-------UCUU--UCUCGGCGUGAGCCU- -5'
6514 5' -50 NC_001847.1 + 96197 0.69 0.953495
Target:  5'- gGCAAUGGcggggccGGAGucGGGGCCGgAgUCGGGg -3'
miRNA:   3'- -UGUUACU-------UCUU--UCUCGGCgUgAGCCU- -5'
6514 5' -50 NC_001847.1 + 96086 0.71 0.920671
Target:  5'- gGCAAUGgcGGAgccggagucggggccGGAGCCGgAgUCGGGg -3'
miRNA:   3'- -UGUUACuuCUU---------------UCUCGGCgUgAGCCU- -5'
6514 5' -50 NC_001847.1 + 94666 0.67 0.987476
Target:  5'- --cGUGAcGGAAGAGCaccuCGCGCUCGuGGa -3'
miRNA:   3'- uguUACUuCUUUCUCG----GCGUGAGC-CU- -5'
6514 5' -50 NC_001847.1 + 93471 0.67 0.990396
Target:  5'- aGCAGgaucuccuUGAAGAGccgcGuGCCGCGCgUCGGGu -3'
miRNA:   3'- -UGUU--------ACUUCUUu---CuCGGCGUG-AGCCU- -5'
6514 5' -50 NC_001847.1 + 92101 0.67 0.98578
Target:  5'- -gGAUGAGGAAGGAGUaguuggaguagCGCACcuuuUCGGc -3'
miRNA:   3'- ugUUACUUCUUUCUCG-----------GCGUG----AGCCu -5'
6514 5' -50 NC_001847.1 + 90331 0.69 0.965306
Target:  5'- cCGAcUGggGcgcGGuGCCGCGCUCGGc -3'
miRNA:   3'- uGUU-ACuuCuu-UCuCGGCGUGAGCCu -5'
6514 5' -50 NC_001847.1 + 85514 0.67 0.990396
Target:  5'- cGCGAgGAAGAccAGGGCCGU-UUCGGGa -3'
miRNA:   3'- -UGUUaCUUCUu-UCUCGGCGuGAGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.