miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 5' -50 NC_001847.1 + 103472 1.09 0.008529
Target:  5'- gACAAUGAAGAAAGAGCCGCACUCGGAc -3'
miRNA:   3'- -UGUUACUUCUUUCUCGGCGUGAGCCU- -5'
6514 5' -50 NC_001847.1 + 659 1.09 0.008529
Target:  5'- gACAAUGAAGAAAGAGCCGCACUCGGAc -3'
miRNA:   3'- -UGUUACUUCUUUCUCGGCGUGAGCCU- -5'
6514 5' -50 NC_001847.1 + 96266 0.83 0.347785
Target:  5'- gGCAAUGGcggggccGGAAccGGGGCCGUACUCGGGg -3'
miRNA:   3'- -UGUUACU-------UCUU--UCUCGGCGUGAGCCU- -5'
6514 5' -50 NC_001847.1 + 7387 0.76 0.688236
Target:  5'- gACAGUGGAGGAcGuGgCGCGCUCGGc -3'
miRNA:   3'- -UGUUACUUCUUuCuCgGCGUGAGCCu -5'
6514 5' -50 NC_001847.1 + 56181 0.75 0.751055
Target:  5'- uGCAucgugGAAGAAguGGAGgCGCGCUCGGu -3'
miRNA:   3'- -UGUua---CUUCUU--UCUCgGCGUGAGCCu -5'
6514 5' -50 NC_001847.1 + 11667 0.73 0.827873
Target:  5'- gGCGGUGAAGggGGcGCUGCA-UCGGc -3'
miRNA:   3'- -UGUUACUUCuuUCuCGGCGUgAGCCu -5'
6514 5' -50 NC_001847.1 + 33880 0.73 0.831421
Target:  5'- gGCAGUGAGGAGGGAcgaggggagcgccggGCCagGCuGCUCGGGg -3'
miRNA:   3'- -UGUUACUUCUUUCU---------------CGG--CG-UGAGCCU- -5'
6514 5' -50 NC_001847.1 + 32906 0.72 0.861829
Target:  5'- gGCGggGAAGccGGGGCCGCGgaCGGGa -3'
miRNA:   3'- -UGUuaCUUCuuUCUCGGCGUgaGCCU- -5'
6514 5' -50 NC_001847.1 + 10878 0.72 0.887802
Target:  5'- gGCGGgaggggGAAGggGGAGCCGgagcuuuggcccgcuCGCUCGGc -3'
miRNA:   3'- -UGUUa-----CUUCuuUCUCGGC---------------GUGAGCCu -5'
6514 5' -50 NC_001847.1 + 113691 0.72 0.887802
Target:  5'- gGCGGgaggggGAAGggGGAGCCGgagcuuuggcccgcuCGCUCGGc -3'
miRNA:   3'- -UGUUa-----CUUCuuUCUCGGC---------------GUGAGCCu -5'
6514 5' -50 NC_001847.1 + 66504 0.72 0.892089
Target:  5'- gGCGGUGAAGuuugggcuGGAGCUGCGCggcUGGGg -3'
miRNA:   3'- -UGUUACUUCuu------UCUCGGCGUGa--GCCU- -5'
6514 5' -50 NC_001847.1 + 96880 0.71 0.912129
Target:  5'- cGCGcUGggGAGGGAccGCCGUGCUCGc- -3'
miRNA:   3'- -UGUuACuuCUUUCU--CGGCGUGAGCcu -5'
6514 5' -50 NC_001847.1 + 96086 0.71 0.920671
Target:  5'- gGCAAUGgcGGAgccggagucggggccGGAGCCGgAgUCGGGg -3'
miRNA:   3'- -UGUUACuuCUU---------------UCUCGGCgUgAGCCU- -5'
6514 5' -50 NC_001847.1 + 32785 0.71 0.924171
Target:  5'- --uGUGggGGGAGGGCCGgGggCGGAc -3'
miRNA:   3'- uguUACuuCUUUCUCGGCgUgaGCCU- -5'
6514 5' -50 NC_001847.1 + 20270 0.7 0.929792
Target:  5'- gACGGcGAGGucGGcGCCGCGCgUCGGAa -3'
miRNA:   3'- -UGUUaCUUCuuUCuCGGCGUG-AGCCU- -5'
6514 5' -50 NC_001847.1 + 115914 0.7 0.945053
Target:  5'- gACGGgaucGAAGggGGGGCUGCcgUCGGGa -3'
miRNA:   3'- -UGUUa---CUUCuuUCUCGGCGugAGCCU- -5'
6514 5' -50 NC_001847.1 + 24105 0.7 0.949613
Target:  5'- gGCGcgGGucccAGGGCuCGCACUCGGGc -3'
miRNA:   3'- -UGUuaCUucuuUCUCG-GCGUGAGCCU- -5'
6514 5' -50 NC_001847.1 + 126918 0.7 0.949613
Target:  5'- gGCGcgGGucccAGGGCuCGCACUCGGGc -3'
miRNA:   3'- -UGUuaCUucuuUCUCG-GCGUGAGCCU- -5'
6514 5' -50 NC_001847.1 + 96197 0.69 0.953495
Target:  5'- gGCAAUGGcggggccGGAGucGGGGCCGgAgUCGGGg -3'
miRNA:   3'- -UGUUACU-------UCUU--UCUCGGCgUgAGCCU- -5'
6514 5' -50 NC_001847.1 + 134520 0.69 0.953913
Target:  5'- gGCGG-GggGAGGcgcGGGCCGCGCgccgcugCGGAg -3'
miRNA:   3'- -UGUUaCuuCUUU---CUCGGCGUGa------GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.