miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 5' -50 NC_001847.1 + 83393 0.68 0.979633
Target:  5'- uCGAUGuccuccuuGGAGAGcAGCCGCGC-CGGc -3'
miRNA:   3'- uGUUACu-------UCUUUC-UCGGCGUGaGCCu -5'
6514 5' -50 NC_001847.1 + 81110 0.66 0.992647
Target:  5'- cCAGUGGcugcuccAGAgcGcGCCGCGCgUCGGAc -3'
miRNA:   3'- uGUUACU-------UCUuuCuCGGCGUG-AGCCU- -5'
6514 5' -50 NC_001847.1 + 76695 0.67 0.983914
Target:  5'- uGCuuuGUGGcgcGGGAGGAGgCGCGC-CGGGa -3'
miRNA:   3'- -UGu--UACU---UCUUUCUCgGCGUGaGCCU- -5'
6514 5' -50 NC_001847.1 + 75466 0.66 0.992753
Target:  5'- gACcggGggGGAGGGGCCagagcGCACgggCGGGc -3'
miRNA:   3'- -UGuuaCuuCUUUCUCGG-----CGUGa--GCCU- -5'
6514 5' -50 NC_001847.1 + 73117 0.66 0.992753
Target:  5'- -gGGUGgcGGAGGuAGCCGCcguGCUCGcGGa -3'
miRNA:   3'- ugUUACuuCUUUC-UCGGCG---UGAGC-CU- -5'
6514 5' -50 NC_001847.1 + 69681 0.66 0.9954
Target:  5'- gGCAGcGuuGGGcgcGGGGCCgGCGCUCGGu -3'
miRNA:   3'- -UGUUaCuuCUU---UCUCGG-CGUGAGCCu -5'
6514 5' -50 NC_001847.1 + 69101 0.66 0.993744
Target:  5'- cGCGcgGAcGGgcGGGCCGCGuuCUCGGc -3'
miRNA:   3'- -UGUuaCUuCUuuCUCGGCGU--GAGCCu -5'
6514 5' -50 NC_001847.1 + 67002 0.69 0.953913
Target:  5'- gGCGccGGAGAAGGGGCagacgCGCGCUCGc- -3'
miRNA:   3'- -UGUuaCUUCUUUCUCG-----GCGUGAGCcu -5'
6514 5' -50 NC_001847.1 + 66504 0.72 0.892089
Target:  5'- gGCGGUGAAGuuugggcuGGAGCUGCGCggcUGGGg -3'
miRNA:   3'- -UGUUACUUCuu------UCUCGGCGUGa--GCCU- -5'
6514 5' -50 NC_001847.1 + 65426 0.68 0.979633
Target:  5'- uGCuccgGGAGgcGGcAGCCGCGCgccgCGGAc -3'
miRNA:   3'- -UGuua-CUUCuuUC-UCGGCGUGa---GCCU- -5'
6514 5' -50 NC_001847.1 + 65096 0.67 0.983914
Target:  5'- gGCGAUcGAGAA--GGCCGCGCUCa-- -3'
miRNA:   3'- -UGUUAcUUCUUucUCGGCGUGAGccu -5'
6514 5' -50 NC_001847.1 + 65091 0.68 0.979633
Target:  5'- gGCAGUGcuaagcugcGAgcGAGCCGCgGCUCGGc -3'
miRNA:   3'- -UGUUACuu-------CUuuCUCGGCG-UGAGCCu -5'
6514 5' -50 NC_001847.1 + 59550 0.68 0.9717
Target:  5'- gGCGGUGggGGcggcGGGGGCgGUGCcggCGGAa -3'
miRNA:   3'- -UGUUACuuCU----UUCUCGgCGUGa--GCCU- -5'
6514 5' -50 NC_001847.1 + 56181 0.75 0.751055
Target:  5'- uGCAucgugGAAGAAguGGAGgCGCGCUCGGu -3'
miRNA:   3'- -UGUua---CUUCUU--UCUCgGCGUGAGCCu -5'
6514 5' -50 NC_001847.1 + 42960 0.66 0.9954
Target:  5'- cGCGcgGggGggGcGGGCCGCcggccgGCcCGGGu -3'
miRNA:   3'- -UGUuaCuuCuuU-CUCGGCG------UGaGCCU- -5'
6514 5' -50 NC_001847.1 + 41457 0.66 0.994624
Target:  5'- --cAUGAaccGGAacGAGAGCUGCACgcgCGGc -3'
miRNA:   3'- uguUACU---UCU--UUCUCGGCGUGa--GCCu -5'
6514 5' -50 NC_001847.1 + 34660 0.67 0.98578
Target:  5'- cGCGccGAGGggGcGGCCGCGCagCGGc -3'
miRNA:   3'- -UGUuaCUUCuuUcUCGGCGUGa-GCCu -5'
6514 5' -50 NC_001847.1 + 33880 0.73 0.831421
Target:  5'- gGCAGUGAGGAGGGAcgaggggagcgccggGCCagGCuGCUCGGGg -3'
miRNA:   3'- -UGUUACUUCUUUCU---------------CGG--CG-UGAGCCU- -5'
6514 5' -50 NC_001847.1 + 32906 0.72 0.861829
Target:  5'- gGCGggGAAGccGGGGCCGCGgaCGGGa -3'
miRNA:   3'- -UGUuaCUUCuuUCUCGGCGUgaGCCU- -5'
6514 5' -50 NC_001847.1 + 32785 0.71 0.924171
Target:  5'- --uGUGggGGGAGGGCCGgGggCGGAc -3'
miRNA:   3'- uguUACuuCUUUCUCGGCgUgaGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.