miRNA display CGI


Results 61 - 80 of 425 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 3196 0.66 0.803008
Target:  5'- gCCgCCGUcgccGCCAUCGCcgGCGCaCGUGc -3'
miRNA:   3'- -GG-GGCAca--UGGUGGUGuaCGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 4535 0.66 0.803008
Target:  5'- gCCUCGcGgcgGCCGcCCGCGggugGCGCgGCGu -3'
miRNA:   3'- -GGGGCaCa--UGGU-GGUGUa---CGCGgCGC- -5'
6515 3' -58.4 NC_001847.1 + 83036 0.66 0.803008
Target:  5'- gCCCGcg-GCCGCUaguGCGcuUGgGCCGCGg -3'
miRNA:   3'- gGGGCacaUGGUGG---UGU--ACgCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 42792 0.66 0.803008
Target:  5'- gCCUCGcgGcGCCGCC-C-UGUGCCGUGg -3'
miRNA:   3'- -GGGGCa-CaUGGUGGuGuACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 20591 0.66 0.803008
Target:  5'- gCCgCUGUGUACCA--GCAUGCcCuCGCGg -3'
miRNA:   3'- -GG-GGCACAUGGUggUGUACGcG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 130610 0.66 0.803008
Target:  5'- aCCCGcgGgcgGCCGCCGCGaggcacgucgUGCGCaCGUu -3'
miRNA:   3'- gGGGCa-Ca--UGGUGGUGU----------ACGCG-GCGc -5'
6515 3' -58.4 NC_001847.1 + 79819 0.66 0.803008
Target:  5'- -aCCGUGgcCCGCUGCcggaagugGCGaCCGCGg -3'
miRNA:   3'- ggGGCACauGGUGGUGua------CGC-GGCGC- -5'
6515 3' -58.4 NC_001847.1 + 56928 0.66 0.803008
Target:  5'- gCCCGggaacacgacgGUG-CACCGCAgcCGCCGCGa -3'
miRNA:   3'- gGGGCa----------CAUgGUGGUGUacGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 1089 0.66 0.803008
Target:  5'- uCCCCGccUGUGacucuggagaCGCCGCGUGCcCCuGCGa -3'
miRNA:   3'- -GGGGC--ACAUg---------GUGGUGUACGcGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 100851 0.66 0.803008
Target:  5'- gCCUCGcUG-ACgGCCGCGaGCGCgGCGc -3'
miRNA:   3'- -GGGGC-ACaUGgUGGUGUaCGCGgCGC- -5'
6515 3' -58.4 NC_001847.1 + 63529 0.66 0.802134
Target:  5'- gCgCGUGUccgcgcugcuggcGCCGCCugGgccgGCGCCGgGc -3'
miRNA:   3'- gGgGCACA-------------UGGUGGugUa---CGCGGCgC- -5'
6515 3' -58.4 NC_001847.1 + 32287 0.66 0.794202
Target:  5'- uCCgCGUGgcgcgGCC-CCGCGacgcCGCCGCGg -3'
miRNA:   3'- -GGgGCACa----UGGuGGUGUac--GCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 115734 0.66 0.794202
Target:  5'- cUCCCGcuuUGCCuGCUGCGU-CGCCGCGg -3'
miRNA:   3'- -GGGGCac-AUGG-UGGUGUAcGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 12054 0.66 0.794202
Target:  5'- gCCCUGcGcGCUgcggacgccgagGCCGCGgaGCGCCGCGg -3'
miRNA:   3'- -GGGGCaCaUGG------------UGGUGUa-CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 112835 0.66 0.794202
Target:  5'- uUCCGcUGcAUCGCCACcgGCuCCGCGu -3'
miRNA:   3'- gGGGC-ACaUGGUGGUGuaCGcGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 29055 0.66 0.794202
Target:  5'- gCgCCGUGcucGCCgGCCGCGcgGCGCCgGCGc -3'
miRNA:   3'- -GgGGCACa--UGG-UGGUGUa-CGCGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 123042 0.66 0.794202
Target:  5'- gCCgCUGgaaGUACgGCCGCggGCGCCGg- -3'
miRNA:   3'- -GG-GGCa--CAUGgUGGUGuaCGCGGCgc -5'
6515 3' -58.4 NC_001847.1 + 10022 0.66 0.794202
Target:  5'- uUCCGcUGcAUCGCCACcgGCuCCGCGu -3'
miRNA:   3'- gGGGC-ACaUGGUGGUGuaCGcGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 28989 0.66 0.794202
Target:  5'- cCCCCaUGgcCUACCcggagGCcgGCGCCgGCGg -3'
miRNA:   3'- -GGGGcACauGGUGG-----UGuaCGCGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 131513 0.66 0.794202
Target:  5'- gUUCGUGUACCugCGCcaggaGCGgCGCa -3'
miRNA:   3'- gGGGCACAUGGugGUGua---CGCgGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.