miRNA display CGI


Results 41 - 60 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 63381 0.66 0.820166
Target:  5'- uCCUCGcGgcgUCugCGCgAUGCGCCGCa -3'
miRNA:   3'- -GGGGCaCau-GGugGUG-UACGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 98690 0.66 0.820166
Target:  5'- gUCCCGcucacacaGCCgcGCCGCGcGCGCCGCu -3'
miRNA:   3'- -GGGGCaca-----UGG--UGGUGUaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 34488 0.66 0.815085
Target:  5'- aCCCC-----CCGCCGCAgcagcgcggcccugGCGCCGCa -3'
miRNA:   3'- -GGGGcacauGGUGGUGUa-------------CGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 90466 0.66 0.811665
Target:  5'- cCCCCGUGUugCuuCCggACAUcGCcuGUCGCGc -3'
miRNA:   3'- -GGGGCACAugGu-GG--UGUA-CG--CGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 76683 0.66 0.811665
Target:  5'- aCCCGU---UCACgCGCGcgGCGCUGCGg -3'
miRNA:   3'- gGGGCAcauGGUG-GUGUa-CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 62597 0.66 0.811665
Target:  5'- gCCCCGcGgcgAUCGCCcCGcuCGCCGCGa -3'
miRNA:   3'- -GGGGCaCa--UGGUGGuGUacGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 52857 0.66 0.811665
Target:  5'- gCCCCG-GUAaCAgauauaUACAUGCGCCGUu -3'
miRNA:   3'- -GGGGCaCAUgGUg-----GUGUACGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 64985 0.66 0.811665
Target:  5'- gCCCGgagcacuucuuUGUGCCugugcgagcggACCGCAaGCGgCGCGa -3'
miRNA:   3'- gGGGC-----------ACAUGG-----------UGGUGUaCGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 32153 0.66 0.811665
Target:  5'- gCCCGcGcacGCCGCgacgGCGUGCGCgGCGg -3'
miRNA:   3'- gGGGCaCa--UGGUGg---UGUACGCGgCGC- -5'
6515 3' -58.4 NC_001847.1 + 134695 0.66 0.811665
Target:  5'- gCCgCCGcc-GCCGCCGC-UGCuGCCGCc -3'
miRNA:   3'- -GG-GGCacaUGGUGGUGuACG-CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 89909 0.66 0.811665
Target:  5'- gCCCGagGUugUGCCGCGcgaggccGCGCuCGCGg -3'
miRNA:   3'- gGGGCa-CAugGUGGUGUa------CGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 104514 0.66 0.811665
Target:  5'- gUCCaCGgcGUcgagcacgaucaGCCGCCGCc-GCGCCGCGg -3'
miRNA:   3'- -GGG-GCa-CA------------UGGUGGUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 118246 0.66 0.811665
Target:  5'- gCCCGggcugGUaaACCugCgcgGCGUGCGCCuGCu -3'
miRNA:   3'- gGGGCa----CA--UGGugG---UGUACGCGG-CGc -5'
6515 3' -58.4 NC_001847.1 + 77478 0.66 0.811665
Target:  5'- aCCaCCGUGc-CCACCGCcUGC-CCGaCGg -3'
miRNA:   3'- -GG-GGCACauGGUGGUGuACGcGGC-GC- -5'
6515 3' -58.4 NC_001847.1 + 115340 0.66 0.811665
Target:  5'- gCCCCGccaccGCCACCGCcucCGCCGaCGa -3'
miRNA:   3'- -GGGGCaca--UGGUGGUGuacGCGGC-GC- -5'
6515 3' -58.4 NC_001847.1 + 1701 0.66 0.811665
Target:  5'- gUCCaCGgcGUcgagcacgaucaGCCGCCGCc-GCGCCGCGg -3'
miRNA:   3'- -GGG-GCa-CA------------UGGUGGUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 120841 0.66 0.811665
Target:  5'- gCCCCGagagGcgGCCgGCCACGccauuuCGCCGCGg -3'
miRNA:   3'- -GGGGCa---Ca-UGG-UGGUGUac----GCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 62759 0.66 0.810807
Target:  5'- gCCCGcGUccACCACCACcaccgagGUGCGCUcgGCc -3'
miRNA:   3'- gGGGCaCA--UGGUGGUG-------UACGCGG--CGc -5'
6515 3' -58.4 NC_001847.1 + 99550 0.66 0.810807
Target:  5'- uUgCGaUGUACCGCagccuugCGCcgGCGCCGCu -3'
miRNA:   3'- gGgGC-ACAUGGUG-------GUGuaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 99188 0.66 0.808221
Target:  5'- cCCUCGUGguccucgcgcgagGCgGCCGCGcgGCGgCGCGc -3'
miRNA:   3'- -GGGGCACa------------UGgUGGUGUa-CGCgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.