miRNA display CGI


Results 41 - 60 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 75132 0.66 0.828502
Target:  5'- gCCCGg--GCC-CCGCcgGgGCCgGCGg -3'
miRNA:   3'- gGGGCacaUGGuGGUGuaCgCGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 90719 0.66 0.828502
Target:  5'- cCCCCGUGcGCgaacgcaGCCGCucGCGgCGCGu -3'
miRNA:   3'- -GGGGCACaUGg------UGGUGuaCGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 134695 0.66 0.811665
Target:  5'- gCCgCCGcc-GCCGCCGC-UGCuGCCGCc -3'
miRNA:   3'- -GG-GGCacaUGGUGGUGuACG-CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 37241 0.66 0.827676
Target:  5'- aCCCGgcggacggcgcgcUGU-UCGCCAUccGCGCCGCc -3'
miRNA:   3'- gGGGC-------------ACAuGGUGGUGuaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 3196 0.66 0.803008
Target:  5'- gCCgCCGUcgccGCCAUCGCcgGCGCaCGUGc -3'
miRNA:   3'- -GG-GGCAca--UGGUGGUGuaCGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 12617 0.66 0.828502
Target:  5'- cCCCCGcuccucaacaUGgagGCgGCCGC-UGCGgCUGCGg -3'
miRNA:   3'- -GGGGC----------ACa--UGgUGGUGuACGC-GGCGC- -5'
6515 3' -58.4 NC_001847.1 + 131342 0.66 0.820166
Target:  5'- gCCgCCGcc-GCCcgGCCGCGUGCGCUucgGCGg -3'
miRNA:   3'- -GG-GGCacaUGG--UGGUGUACGCGG---CGC- -5'
6515 3' -58.4 NC_001847.1 + 32153 0.66 0.811665
Target:  5'- gCCCGcGcacGCCGCgacgGCGUGCGCgGCGg -3'
miRNA:   3'- gGGGCaCa--UGGUGg---UGUACGCGgCGC- -5'
6515 3' -58.4 NC_001847.1 + 89438 0.66 0.820166
Target:  5'- --aCGUGUACCACgCGCucgGC-CCGUGg -3'
miRNA:   3'- gggGCACAUGGUG-GUGua-CGcGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 63381 0.66 0.820166
Target:  5'- uCCUCGcGgcgUCugCGCgAUGCGCCGCa -3'
miRNA:   3'- -GGGGCaCau-GGugGUG-UACGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 84109 0.66 0.785255
Target:  5'- -aCCGUGUuuuggaucGCaGCCAgA-GCGCCGCGa -3'
miRNA:   3'- ggGGCACA--------UGgUGGUgUaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 105560 0.66 0.828502
Target:  5'- cCCCCGgc--CCGgCGCGgcgGCGCCgGCGc -3'
miRNA:   3'- -GGGGCacauGGUgGUGUa--CGCGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 70107 0.66 0.785255
Target:  5'- aCCgCGgcaaaauCCGCCACGUgGCGCuCGCGc -3'
miRNA:   3'- -GGgGCacau---GGUGGUGUA-CGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 50453 0.66 0.785255
Target:  5'- gCCUuc-UACgGCCACGUgaGCGCCGCGc -3'
miRNA:   3'- gGGGcacAUGgUGGUGUA--CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 59490 0.66 0.820166
Target:  5'- uCCCCagccggcaggggGUGcGCCgagGCCGCAccggcuuggUGCGCUGCGc -3'
miRNA:   3'- -GGGG------------CACaUGG---UGGUGU---------ACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 18586 0.66 0.828502
Target:  5'- gCCCaCGUGcGCCAuuagcgcgccguCCGCGgcgucgGCGCgCGCGu -3'
miRNA:   3'- -GGG-GCACaUGGU------------GGUGUa-----CGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 90466 0.66 0.811665
Target:  5'- cCCCCGUGUugCuuCCggACAUcGCcuGUCGCGc -3'
miRNA:   3'- -GGGGCACAugGu-GG--UGUA-CG--CGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 48625 0.66 0.828502
Target:  5'- -gCCGaUGUgaacGCCGCgGCGgcgggGCGCCGCc -3'
miRNA:   3'- ggGGC-ACA----UGGUGgUGUa----CGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 38877 0.66 0.828502
Target:  5'- gCCCCGguuccgGCC-CCGCcauUGCcGCCGCc -3'
miRNA:   3'- -GGGGCaca---UGGuGGUGu--ACG-CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 89909 0.66 0.811665
Target:  5'- gCCCGagGUugUGCCGCGcgaggccGCGCuCGCGg -3'
miRNA:   3'- gGGGCa-CAugGUGGUGUa------CGCG-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.