miRNA display CGI


Results 21 - 40 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 63381 0.66 0.820166
Target:  5'- uCCUCGcGgcgUCugCGCgAUGCGCCGCa -3'
miRNA:   3'- -GGGGCaCau-GGugGUG-UACGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 131868 0.66 0.794202
Target:  5'- gCgCCGUGcucGCCgGCCGCGcgGCGCCgGCGc -3'
miRNA:   3'- -GgGGCACa--UGG-UGGUGUa-CGCGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 131802 0.66 0.794202
Target:  5'- cCCCCaUGgcCUACCcggagGCcgGCGCCgGCGg -3'
miRNA:   3'- -GGGGcACauGGUGG-----UGuaCGCGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 27507 0.66 0.820166
Target:  5'- gCCUCGgccGCCGCCGCGgcgGCGgCGgGg -3'
miRNA:   3'- -GGGGCacaUGGUGGUGUa--CGCgGCgC- -5'
6515 3' -58.4 NC_001847.1 + 83036 0.66 0.803008
Target:  5'- gCCCGcg-GCCGCUaguGCGcuUGgGCCGCGg -3'
miRNA:   3'- gGGGCacaUGGUGG---UGU--ACgCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 44081 0.66 0.785255
Target:  5'- cCCCCcaaaGCCgACCGCGUGUGCgGCc -3'
miRNA:   3'- -GGGGcacaUGG-UGGUGUACGCGgCGc -5'
6515 3' -58.4 NC_001847.1 + 32153 0.66 0.811665
Target:  5'- gCCCGcGcacGCCGCgacgGCGUGCGCgGCGg -3'
miRNA:   3'- gGGGCaCa--UGGUGg---UGUACGCGgCGC- -5'
6515 3' -58.4 NC_001847.1 + 104514 0.66 0.811665
Target:  5'- gUCCaCGgcGUcgagcacgaucaGCCGCCGCc-GCGCCGCGg -3'
miRNA:   3'- -GGG-GCa-CA------------UGGUGGUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 89909 0.66 0.811665
Target:  5'- gCCCGagGUugUGCCGCGcgaggccGCGCuCGCGg -3'
miRNA:   3'- gGGGCa-CAugGUGGUGUa------CGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 5792 0.66 0.820166
Target:  5'- gCCCCGg--GCCcggcACCGCGcuUGCGCUugGCGc -3'
miRNA:   3'- -GGGGCacaUGG----UGGUGU--ACGCGG--CGC- -5'
6515 3' -58.4 NC_001847.1 + 12054 0.66 0.794202
Target:  5'- gCCCUGcGcGCUgcggacgccgagGCCGCGgaGCGCCGCGg -3'
miRNA:   3'- -GGGGCaCaUGG------------UGGUGUa-CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 32287 0.66 0.794202
Target:  5'- uCCgCGUGgcgcgGCC-CCGCGacgcCGCCGCGg -3'
miRNA:   3'- -GGgGCACa----UGGuGGUGUac--GCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 120225 0.66 0.794202
Target:  5'- gCCuuGUGUAUCGCgGCGaggcagucggccUGCG-CGCGg -3'
miRNA:   3'- -GGggCACAUGGUGgUGU------------ACGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 76683 0.66 0.811665
Target:  5'- aCCCGU---UCACgCGCGcgGCGCUGCGg -3'
miRNA:   3'- gGGGCAcauGGUG-GUGUa-CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 1089 0.66 0.803008
Target:  5'- uCCCCGccUGUGacucuggagaCGCCGCGUGCcCCuGCGa -3'
miRNA:   3'- -GGGGC--ACAUg---------GUGGUGUACGcGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 134695 0.66 0.811665
Target:  5'- gCCgCCGcc-GCCGCCGC-UGCuGCCGCc -3'
miRNA:   3'- -GG-GGCacaUGGUGGUGuACG-CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 68935 0.66 0.785255
Target:  5'- gCCCGa--GCCGCCGCugggcgGCGCCgauGCGg -3'
miRNA:   3'- gGGGCacaUGGUGGUGua----CGCGG---CGC- -5'
6515 3' -58.4 NC_001847.1 + 121080 0.66 0.784353
Target:  5'- gCUgGUGcugcugcUGCUugCGCucUGCGCCGCGa -3'
miRNA:   3'- gGGgCAC-------AUGGugGUGu-ACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 66218 0.66 0.785255
Target:  5'- gCCCGcg-GCCGCCGCGccgaaccucaGCGCgGCGg -3'
miRNA:   3'- gGGGCacaUGGUGGUGUa---------CGCGgCGC- -5'
6515 3' -58.4 NC_001847.1 + 62597 0.66 0.811665
Target:  5'- gCCCCGcGgcgAUCGCCcCGcuCGCCGCGa -3'
miRNA:   3'- -GGGGCaCa--UGGUGGuGUacGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.