miRNA display CGI


Results 21 - 40 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 30712 0.75 0.317845
Target:  5'- gCCgCG-GUGCUGCCGCggcgcaGUGCGCCGCGc -3'
miRNA:   3'- -GGgGCaCAUGGUGGUG------UACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 113197 0.75 0.325025
Target:  5'- cCCCCG-GUGCCGcCCGCGa--GCCGCGg -3'
miRNA:   3'- -GGGGCaCAUGGU-GGUGUacgCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 10384 0.75 0.325025
Target:  5'- cCCCCG-GUGCCGcCCGCGa--GCCGCGg -3'
miRNA:   3'- -GGGGCaCAUGGU-GGUGUacgCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 68821 0.75 0.325025
Target:  5'- gCCCCac---CCGCCGCAggGCGCCGCGa -3'
miRNA:   3'- -GGGGcacauGGUGGUGUa-CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 98778 0.75 0.339745
Target:  5'- gCCCGg--GCCGCgGCG-GCGCCGCGu -3'
miRNA:   3'- gGGGCacaUGGUGgUGUaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 102540 0.75 0.347284
Target:  5'- gCUCCGUGUcgGCCGCgACG-GCGgCCGCGa -3'
miRNA:   3'- -GGGGCACA--UGGUGgUGUaCGC-GGCGC- -5'
6515 3' -58.4 NC_001847.1 + 3714 0.74 0.354942
Target:  5'- gCCCCGcg-GCCGCCGCGUaGCG-CGCGg -3'
miRNA:   3'- -GGGGCacaUGGUGGUGUA-CGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 48668 0.74 0.354942
Target:  5'- gCCUCGUcguccGUGCCGCCGUcgGCGCCGuCGg -3'
miRNA:   3'- -GGGGCA-----CAUGGUGGUGuaCGCGGC-GC- -5'
6515 3' -58.4 NC_001847.1 + 106527 0.74 0.354942
Target:  5'- gCCCCGcg-GCCGCCGCGUaGCG-CGCGg -3'
miRNA:   3'- -GGGGCacaUGGUGGUGUA-CGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 116153 0.74 0.362719
Target:  5'- gCCCGaGgcgcugGCgGCCGCggGCGCCGCGg -3'
miRNA:   3'- gGGGCaCa-----UGgUGGUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 96177 0.74 0.362719
Target:  5'- gCCCCGccgcgGCCGCCGCcaugGCGCuCGCGg -3'
miRNA:   3'- -GGGGCaca--UGGUGGUGua--CGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 107440 0.74 0.362719
Target:  5'- gCCCuUGcccCCGCCGCGUGCGCCgGCGc -3'
miRNA:   3'- gGGGcACau-GGUGGUGUACGCGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 101069 0.74 0.362719
Target:  5'- gCCCCGgg-GCCGCCGCggGgGCCGgGu -3'
miRNA:   3'- -GGGGCacaUGGUGGUGuaCgCGGCgC- -5'
6515 3' -58.4 NC_001847.1 + 115715 0.74 0.362719
Target:  5'- gCCCGUGUgcgcuuGCCGCCACGggcGCGCUGg- -3'
miRNA:   3'- gGGGCACA------UGGUGGUGUa--CGCGGCgc -5'
6515 3' -58.4 NC_001847.1 + 43892 0.74 0.362719
Target:  5'- aCCCCaUGUG-CGCCGCGUGCgGCUGCa -3'
miRNA:   3'- -GGGGcACAUgGUGGUGUACG-CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 46257 0.74 0.362719
Target:  5'- cCCCCGgcggGaGCCGCCGCcgcCGCCGCGc -3'
miRNA:   3'- -GGGGCa---CaUGGUGGUGuacGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 93041 0.74 0.369818
Target:  5'- cCCCCGgcgccuggacgGUGCCggcACCGCGaggccgaUGCGCCGCa -3'
miRNA:   3'- -GGGGCa----------CAUGG---UGGUGU-------ACGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 18701 0.74 0.378623
Target:  5'- gCCCGcGUcACCGCCA---GCGCCGCGg -3'
miRNA:   3'- gGGGCaCA-UGGUGGUguaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 82455 0.74 0.386748
Target:  5'- aCCCCGcGcACgGCCGCGUGCGgCGUGc -3'
miRNA:   3'- -GGGGCaCaUGgUGGUGUACGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 133658 0.73 0.394988
Target:  5'- aCCCCGagGcGCCGCCGC-UGCggcucuGCCGCGg -3'
miRNA:   3'- -GGGGCa-CaUGGUGGUGuACG------CGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.