miRNA display CGI


Results 21 - 40 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 85422 0.66 0.828502
Target:  5'- gCCUCGccGgcgcccACUugCACggGCGCCGCGc -3'
miRNA:   3'- -GGGGCa-Ca-----UGGugGUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 62410 0.66 0.827676
Target:  5'- aCCCGccggcgcUGUugC-CCGCGUGCcugcuGCCGCc -3'
miRNA:   3'- gGGGC-------ACAugGuGGUGUACG-----CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 37241 0.66 0.827676
Target:  5'- aCCCGgcggacggcgcgcUGU-UCGCCAUccGCGCCGCc -3'
miRNA:   3'- gGGGC-------------ACAuGGUGGUGuaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 120495 0.66 0.826849
Target:  5'- gCCCCGcucgcagcgaGCgGCgCGCGaGCGCCGCGg -3'
miRNA:   3'- -GGGGCaca-------UGgUG-GUGUaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 104549 0.66 0.826019
Target:  5'- gCCCCGgg-GCCGCUACGcggcgguccuccUGgaccucgucccagaCGCCGCGg -3'
miRNA:   3'- -GGGGCacaUGGUGGUGU------------AC--------------GCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 74104 0.66 0.820166
Target:  5'- -gCCGcGUACCGCUGCcgGUucccgGCCGUGg -3'
miRNA:   3'- ggGGCaCAUGGUGGUGuaCG-----CGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 127404 0.66 0.820166
Target:  5'- gCCCUG---GCCGCCGCcuccGCGcCCGCGc -3'
miRNA:   3'- -GGGGCacaUGGUGGUGua--CGC-GGCGC- -5'
6515 3' -58.4 NC_001847.1 + 131342 0.66 0.820166
Target:  5'- gCCgCCGcc-GCCcgGCCGCGUGCGCUucgGCGg -3'
miRNA:   3'- -GG-GGCacaUGG--UGGUGUACGCGG---CGC- -5'
6515 3' -58.4 NC_001847.1 + 89438 0.66 0.820166
Target:  5'- --aCGUGUACCACgCGCucgGC-CCGUGg -3'
miRNA:   3'- gggGCACAUGGUG-GUGua-CGcGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 112283 0.66 0.820166
Target:  5'- -gCCGUGcacACgGCCGCGUcGUGCUGCa -3'
miRNA:   3'- ggGGCACa--UGgUGGUGUA-CGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 124828 0.66 0.820166
Target:  5'- gUCCaUGguUGCCGCCGCAgcacCGCCGCa -3'
miRNA:   3'- gGGGcAC--AUGGUGGUGUac--GCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 28529 0.66 0.820166
Target:  5'- gCCgCCGcc-GCCcgGCCGCGUGCGCUucgGCGg -3'
miRNA:   3'- -GG-GGCacaUGG--UGGUGUACGCGG---CGC- -5'
6515 3' -58.4 NC_001847.1 + 116372 0.66 0.820166
Target:  5'- gCUCGcgcUGUcgGCCGCCGCcUuaGCCGCGg -3'
miRNA:   3'- gGGGC---ACA--UGGUGGUGuAcgCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 98690 0.66 0.820166
Target:  5'- gUCCCGcucacacaGCCgcGCCGCGcGCGCCGCu -3'
miRNA:   3'- -GGGGCaca-----UGG--UGGUGUaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 60861 0.66 0.820166
Target:  5'- gCCCGccgagGCCAgCGCAgcGCGCgCGCGg -3'
miRNA:   3'- gGGGCaca--UGGUgGUGUa-CGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 5792 0.66 0.820166
Target:  5'- gCCCCGg--GCCcggcACCGCGcuUGCGCUugGCGc -3'
miRNA:   3'- -GGGGCacaUGG----UGGUGU--ACGCGG--CGC- -5'
6515 3' -58.4 NC_001847.1 + 99001 0.66 0.820166
Target:  5'- gCCgGUGU-CCucguACCACA-GCGCUGCc -3'
miRNA:   3'- gGGgCACAuGG----UGGUGUaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 63381 0.66 0.820166
Target:  5'- uCCUCGcGgcgUCugCGCgAUGCGCCGCa -3'
miRNA:   3'- -GGGGCaCau-GGugGUG-UACGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 52095 0.66 0.820166
Target:  5'- aCCUCGUGcGCUcggucaugGCCACGcgGC-CCGCGg -3'
miRNA:   3'- -GGGGCACaUGG--------UGGUGUa-CGcGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 27507 0.66 0.820166
Target:  5'- gCCUCGgccGCCGCCGCGgcgGCGgCGgGg -3'
miRNA:   3'- -GGGGCacaUGGUGGUGUa--CGCgGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.