miRNA display CGI


Results 21 - 40 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 4354 0.68 0.682974
Target:  5'- gCCCCGgccgcggccgccuCCACCGCGaccgcgagcgcgcGCGCCGCGg -3'
miRNA:   3'- -GGGGCacau---------GGUGGUGUa------------CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 4535 0.66 0.803008
Target:  5'- gCCUCGcGgcgGCCGcCCGCGggugGCGCgGCGu -3'
miRNA:   3'- -GGGGCaCa--UGGU-GGUGUa---CGCGgCGC- -5'
6515 3' -58.4 NC_001847.1 + 5792 0.66 0.820166
Target:  5'- gCCCCGg--GCCcggcACCGCGcuUGCGCUugGCGc -3'
miRNA:   3'- -GGGGCacaUGG----UGGUGU--ACGCGG--CGC- -5'
6515 3' -58.4 NC_001847.1 + 6787 0.67 0.748228
Target:  5'- gCUCCGUG-GCCACCAgcagcgcgugauCAUGU-CCGCGu -3'
miRNA:   3'- -GGGGCACaUGGUGGU------------GUACGcGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 7026 0.71 0.52884
Target:  5'- cCCCUGUGgacgACCACCGCAgcuucccacccCGCUGCu -3'
miRNA:   3'- -GGGGCACa---UGGUGGUGUac---------GCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 7097 0.73 0.420376
Target:  5'- aUCCCGUGUGCUugCA--UGCaaGCCGCa -3'
miRNA:   3'- -GGGGCACAUGGugGUguACG--CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 10022 0.66 0.794202
Target:  5'- uUCCGcUGcAUCGCCACcgGCuCCGCGu -3'
miRNA:   3'- gGGGC-ACaUGGUGGUGuaCGcGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 10384 0.75 0.325025
Target:  5'- cCCCCG-GUGCCGcCCGCGa--GCCGCGg -3'
miRNA:   3'- -GGGGCaCAUGGU-GGUGUacgCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 11090 0.7 0.579913
Target:  5'- aCCCCGUGcuguUCaACCACG-GCGUCGUGg -3'
miRNA:   3'- -GGGGCACau--GG-UGGUGUaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 11416 0.67 0.738705
Target:  5'- gCCgCCGaUGccGCCGCCGC-UGCuGCCGCc -3'
miRNA:   3'- -GG-GGC-ACa-UGGUGGUGuACG-CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 12054 0.66 0.794202
Target:  5'- gCCCUGcGcGCUgcggacgccgagGCCGCGgaGCGCCGCGg -3'
miRNA:   3'- -GGGGCaCaUGG------------UGGUGUa-CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 12617 0.66 0.828502
Target:  5'- cCCCCGcuccucaacaUGgagGCgGCCGC-UGCGgCUGCGg -3'
miRNA:   3'- -GGGGC----------ACa--UGgUGGUGuACGC-GGCGC- -5'
6515 3' -58.4 NC_001847.1 + 12913 0.68 0.709633
Target:  5'- gCgCGccGUGCCGCCGCGgggGCGCgCGUGu -3'
miRNA:   3'- gGgGCa-CAUGGUGGUGUa--CGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 13288 0.71 0.540497
Target:  5'- gCCCUGUGcGCgCGCUACGcggGCGCCGgGc -3'
miRNA:   3'- -GGGGCACaUG-GUGGUGUa--CGCGGCgC- -5'
6515 3' -58.4 NC_001847.1 + 13955 0.69 0.618897
Target:  5'- gCCCCGcgcaaGUGCCGCCccGCAUGuCGCgcacgucCGCGg -3'
miRNA:   3'- -GGGGCa----CAUGGUGG--UGUAC-GCG-------GCGC- -5'
6515 3' -58.4 NC_001847.1 + 14796 0.66 0.828502
Target:  5'- gUCCCGuUGUAgCGCCGCccG-GCCGgGa -3'
miRNA:   3'- -GGGGC-ACAUgGUGGUGuaCgCGGCgC- -5'
6515 3' -58.4 NC_001847.1 + 15933 0.67 0.729092
Target:  5'- gCCCCGcgGUG--GCCGCG-GCGCCGaCGa -3'
miRNA:   3'- -GGGGCa-CAUggUGGUGUaCGCGGC-GC- -5'
6515 3' -58.4 NC_001847.1 + 15992 0.71 0.530777
Target:  5'- gCCCCGcg-GCgGCCGCG-GCGCCGaCGa -3'
miRNA:   3'- -GGGGCacaUGgUGGUGUaCGCGGC-GC- -5'
6515 3' -58.4 NC_001847.1 + 16044 0.68 0.689921
Target:  5'- gCCCCGcc-GCC-CCGCG-GCGgCCGCGg -3'
miRNA:   3'- -GGGGCacaUGGuGGUGUaCGC-GGCGC- -5'
6515 3' -58.4 NC_001847.1 + 16102 0.66 0.784353
Target:  5'- gCCgGcGUACCGCUucccacaGCGUGCGCCccaccuGCGg -3'
miRNA:   3'- gGGgCaCAUGGUGG-------UGUACGCGG------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.