miRNA display CGI


Results 1 - 20 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 276 0.67 0.748228
Target:  5'- gCCCGgggGCCGCCgagcccgcGCggGCGCCGUc -3'
miRNA:   3'- gGGGCacaUGGUGG--------UGuaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 364 0.75 0.317845
Target:  5'- gCCCCGgGgcCCGCCcCGcGCGCCGCGc -3'
miRNA:   3'- -GGGGCaCauGGUGGuGUaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 619 1.11 0.00131
Target:  5'- gCCCCGUGUACCACCACAUGCGCCGCGg -3'
miRNA:   3'- -GGGGCACAUGGUGGUGUACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 909 0.68 0.679991
Target:  5'- gCCgCCGgccGCCGcCCGCcgGCGCCGgGa -3'
miRNA:   3'- -GG-GGCacaUGGU-GGUGuaCGCGGCgC- -5'
6515 3' -58.4 NC_001847.1 + 1074 0.68 0.679991
Target:  5'- gUCCGcGUcCCAguCCACGccggGCGCCGCGg -3'
miRNA:   3'- gGGGCaCAuGGU--GGUGUa---CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 1089 0.66 0.803008
Target:  5'- uCCCCGccUGUGacucuggagaCGCCGCGUGCcCCuGCGa -3'
miRNA:   3'- -GGGGC--ACAUg---------GUGGUGUACGcGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 1453 0.71 0.530777
Target:  5'- gCCaCCGUGUagcgcacguuGCCGCCGCGgcagaGCCGCa -3'
miRNA:   3'- -GG-GGCACA----------UGGUGGUGUacg--CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 1527 0.68 0.719398
Target:  5'- cCCCCGcgcgcgcuUGUGCCGCC-CAaGC-CCGCc -3'
miRNA:   3'- -GGGGC--------ACAUGGUGGuGUaCGcGGCGc -5'
6515 3' -58.4 NC_001847.1 + 1599 0.69 0.670024
Target:  5'- gCUCGg--GCCAgCGCGcggcgcacUGCGCCGCGg -3'
miRNA:   3'- gGGGCacaUGGUgGUGU--------ACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 1701 0.66 0.811665
Target:  5'- gUCCaCGgcGUcgagcacgaucaGCCGCCGCc-GCGCCGCGg -3'
miRNA:   3'- -GGG-GCa-CA------------UGGUGGUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 2205 0.67 0.729092
Target:  5'- aCCUCGgggcggcaGUagGCCGCCA---GCGCCGCGg -3'
miRNA:   3'- -GGGGCa-------CA--UGGUGGUguaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 2747 0.66 0.828502
Target:  5'- cCCCCGgc--CCGgCGCGgcgGCGCCgGCGc -3'
miRNA:   3'- -GGGGCacauGGUgGUGUa--CGCGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 3196 0.66 0.803008
Target:  5'- gCCgCCGUcgccGCCAUCGCcgGCGCaCGUGc -3'
miRNA:   3'- -GG-GGCAca--UGGUGGUGuaCGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 3239 0.69 0.639976
Target:  5'- gCCCGcgccGUGCuCGCCggcggcaggggcGCcgGCGCCGCGc -3'
miRNA:   3'- gGGGCa---CAUG-GUGG------------UGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 3431 0.67 0.738705
Target:  5'- gCCaCGcagGCCGCCACGUGCGgCaGCGc -3'
miRNA:   3'- gGG-GCacaUGGUGGUGUACGCgG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 3529 0.67 0.738705
Target:  5'- -gCCGUGgccgacUACgGCCGCGaGCGCgGCGg -3'
miRNA:   3'- ggGGCAC------AUGgUGGUGUaCGCGgCGC- -5'
6515 3' -58.4 NC_001847.1 + 3541 0.7 0.56999
Target:  5'- gCCCCGgcaGCC-CUGCAcGCGCCGCu -3'
miRNA:   3'- -GGGGCacaUGGuGGUGUaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 3714 0.74 0.354942
Target:  5'- gCCCCGcg-GCCGCCGCGUaGCG-CGCGg -3'
miRNA:   3'- -GGGGCacaUGGUGGUGUA-CGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 3920 0.67 0.757653
Target:  5'- gCgCCG-GUugCGcgcCCGCGcugGCGCCGCGg -3'
miRNA:   3'- -GgGGCaCAugGU---GGUGUa--CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 4194 0.7 0.606867
Target:  5'- gCCCGUGgGCCGCgCGCAggcagccaaagcccUGCGCgGUGc -3'
miRNA:   3'- gGGGCACaUGGUG-GUGU--------------ACGCGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.