miRNA display CGI


Results 1 - 20 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 135090 0.73 0.40334
Target:  5'- cCCCCGc---CCGCCGCAaugcacGCGCCGCGc -3'
miRNA:   3'- -GGGGCacauGGUGGUGUa-----CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 134695 0.66 0.811665
Target:  5'- gCCgCCGcc-GCCGCCGC-UGCuGCCGCc -3'
miRNA:   3'- -GG-GGCacaUGGUGGUGuACG-CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 134666 0.72 0.446726
Target:  5'- gCCCCGcc-GCCGCCGC-UGCuGCCGCc -3'
miRNA:   3'- -GGGGCacaUGGUGGUGuACG-CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 134111 0.69 0.629937
Target:  5'- gCUCGUGcUGCUGCgGC--GCGCCGCGg -3'
miRNA:   3'- gGGGCAC-AUGGUGgUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 134021 0.7 0.560109
Target:  5'- gCCgCCGcugGUGCUggagGCCGCGgcgGCGCCGCc -3'
miRNA:   3'- -GG-GGCa--CAUGG----UGGUGUa--CGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 133910 0.68 0.709633
Target:  5'- gCCgGUGUACCugGCCuGCggGCGgCGCGc -3'
miRNA:   3'- gGGgCACAUGG--UGG-UGuaCGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 133721 0.67 0.766045
Target:  5'- gCCUGggcccGCCACCGCggugcccGUGcCGCCGCGc -3'
miRNA:   3'- gGGGCaca--UGGUGGUG-------UAC-GCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 133658 0.73 0.394988
Target:  5'- aCCCCGagGcGCCGCCGC-UGCggcucuGCCGCGg -3'
miRNA:   3'- -GGGGCa-CaUGGUGGUGuACG------CGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 133525 0.75 0.317845
Target:  5'- gCCgCG-GUGCUGCCGCggcgcaGUGCGCCGCGc -3'
miRNA:   3'- -GGgGCaCAUGGUGGUG------UACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 133218 0.69 0.650008
Target:  5'- gCCCGaGUGgCCGCC----GCGCCGCGg -3'
miRNA:   3'- gGGGCaCAU-GGUGGuguaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 133105 0.73 0.411804
Target:  5'- aCCCuauCGUG-GCCACgGCcgGCGCCGUGc -3'
miRNA:   3'- -GGG---GCACaUGGUGgUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 133067 0.68 0.719398
Target:  5'- gCCCCGcgGggcgcucgccGCCACCGCugcgGCGgCGCGu -3'
miRNA:   3'- -GGGGCa-Ca---------UGGUGGUGua--CGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 132961 0.66 0.785255
Target:  5'- gCCCGcacGCCGCCcaggcggcGCggGCGCUGCGa -3'
miRNA:   3'- gGGGCacaUGGUGG--------UGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 132897 0.73 0.436074
Target:  5'- gCCCGgggACUACCACAcgcccgcgcccaGCGCCGCGg -3'
miRNA:   3'- gGGGCacaUGGUGGUGUa-----------CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 132556 0.69 0.650008
Target:  5'- gCUCGcGUGCgGCCGCG-GCGgCCGCGc -3'
miRNA:   3'- gGGGCaCAUGgUGGUGUaCGC-GGCGC- -5'
6515 3' -58.4 NC_001847.1 + 132365 0.7 0.573955
Target:  5'- gCCCUGgagGCCGCCggcgggggcgccggcGCcgGCGCCGCc -3'
miRNA:   3'- -GGGGCacaUGGUGG---------------UGuaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 132322 0.68 0.689921
Target:  5'- cCCgCCGgcggagGUGCCGgCGCGgcugGCGgCCGCGc -3'
miRNA:   3'- -GG-GGCa-----CAUGGUgGUGUa---CGC-GGCGC- -5'
6515 3' -58.4 NC_001847.1 + 132023 0.7 0.56999
Target:  5'- cUCCCG-GUGCUcucgGCCGCGgcGgGCCGCGg -3'
miRNA:   3'- -GGGGCaCAUGG----UGGUGUa-CgCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 131996 0.68 0.699804
Target:  5'- gCCCGccg--CGCCGCcgGCGCCGCc -3'
miRNA:   3'- gGGGCacaugGUGGUGuaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 131868 0.66 0.794202
Target:  5'- gCgCCGUGcucGCCgGCCGCGcgGCGCCgGCGc -3'
miRNA:   3'- -GgGGCACa--UGG-UGGUGUa-CGCGG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.