miRNA display CGI


Results 21 - 40 of 425 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 131802 0.66 0.794202
Target:  5'- cCCCCaUGgcCUACCcggagGCcgGCGCCgGCGg -3'
miRNA:   3'- -GGGGcACauGGUGG-----UGuaCGCGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 131513 0.66 0.794202
Target:  5'- gUUCGUGUACCugCGCcaggaGCGgCGCa -3'
miRNA:   3'- gGGGCACAUGGugGUGua---CGCgGCGc -5'
6515 3' -58.4 NC_001847.1 + 131342 0.66 0.820166
Target:  5'- gCCgCCGcc-GCCcgGCCGCGUGCGCUucgGCGg -3'
miRNA:   3'- -GG-GGCacaUGG--UGGUGUACGCGG---CGC- -5'
6515 3' -58.4 NC_001847.1 + 131247 0.7 0.599861
Target:  5'- gCCCGcgcUGgcuaCGCCGCG-GCGCCGCGc -3'
miRNA:   3'- gGGGC---ACaug-GUGGUGUaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 130610 0.66 0.803008
Target:  5'- aCCCGcgGgcgGCCGCCGCGaggcacgucgUGCGCaCGUu -3'
miRNA:   3'- gGGGCa-Ca--UGGUGGUGU----------ACGCG-GCGc -5'
6515 3' -58.4 NC_001847.1 + 130100 0.67 0.748228
Target:  5'- gUCCCGUcgGaGCCGCCGCcgGuCGCC-CGa -3'
miRNA:   3'- -GGGGCA--CaUGGUGGUGuaC-GCGGcGC- -5'
6515 3' -58.4 NC_001847.1 + 129929 0.67 0.778001
Target:  5'- gCCCCGccgGCCGCCGCGgcgagagagccgGCgagggcuucucccgcGCCGCGg -3'
miRNA:   3'- -GGGGCacaUGGUGGUGUa-----------CG---------------CGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 127404 0.66 0.820166
Target:  5'- gCCCUG---GCCGCCGCcuccGCGcCCGCGc -3'
miRNA:   3'- -GGGGCacaUGGUGGUGua--CGC-GGCGC- -5'
6515 3' -58.4 NC_001847.1 + 127035 0.73 0.437839
Target:  5'- gCCCCGc--GCCugCGCugGCGCCGCGu -3'
miRNA:   3'- -GGGGCacaUGGugGUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 127031 0.69 0.660026
Target:  5'- gCCCCGcgguUGUACgggGCCACGUGggucggcgccuCGCCGUGg -3'
miRNA:   3'- -GGGGC----ACAUGg--UGGUGUAC-----------GCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 126686 0.71 0.521121
Target:  5'- cCCCCGgcccgGcGCCGCCuccgacCcgGCGCCGCc -3'
miRNA:   3'- -GGGGCa----CaUGGUGGu-----GuaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 125051 0.67 0.738705
Target:  5'- uCCCCGccgcuUGUGCUcCCGC--GCGCgGCGg -3'
miRNA:   3'- -GGGGC-----ACAUGGuGGUGuaCGCGgCGC- -5'
6515 3' -58.4 NC_001847.1 + 124828 0.66 0.820166
Target:  5'- gUCCaUGguUGCCGCCGCAgcacCGCCGCa -3'
miRNA:   3'- gGGGcAC--AUGGUGGUGUac--GCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 124367 0.67 0.766972
Target:  5'- gCCCGcGUACCGCUcuuCccGCGCgCGCa -3'
miRNA:   3'- gGGGCaCAUGGUGGu--GuaCGCG-GCGc -5'
6515 3' -58.4 NC_001847.1 + 123994 0.69 0.629937
Target:  5'- gCCgGUaGUuuaGCCGCCGCAgcucCGCCGCGu -3'
miRNA:   3'- gGGgCA-CA---UGGUGGUGUac--GCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 123464 0.67 0.766972
Target:  5'- gCCCGgcgacgGCCGCCGCggGCucggcuggggccGCCGCa -3'
miRNA:   3'- gGGGCaca---UGGUGGUGuaCG------------CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 123328 0.67 0.752011
Target:  5'- cCCCCGcgcgcUGUGCCGucugacggaaagcacCCGCGUGUaggGCUGCa -3'
miRNA:   3'- -GGGGC-----ACAUGGU---------------GGUGUACG---CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 123042 0.66 0.794202
Target:  5'- gCCgCUGgaaGUACgGCCGCggGCGCCGg- -3'
miRNA:   3'- -GG-GGCa--CAUGgUGGUGuaCGCGGCgc -5'
6515 3' -58.4 NC_001847.1 + 122896 0.69 0.639976
Target:  5'- gUCUGUGUccauAgCAUCGCcgGCGCCGUGa -3'
miRNA:   3'- gGGGCACA----UgGUGGUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 122650 0.67 0.764188
Target:  5'- gCCCGgGUucuuggccgcccccGCCGCCACGcgGgaaGCCGCGg -3'
miRNA:   3'- gGGGCaCA--------------UGGUGGUGUa-Cg--CGGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.