miRNA display CGI


Results 41 - 60 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 17956 0.69 0.629937
Target:  5'- -gUCGUGUGCCG-CGCuUGCGCuCGCGu -3'
miRNA:   3'- ggGGCACAUGGUgGUGuACGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 18419 0.77 0.235295
Target:  5'- --gCGUGcaggGCCuugGCCACGUGCGCCGCGg -3'
miRNA:   3'- gggGCACa---UGG---UGGUGUACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 18482 0.67 0.755777
Target:  5'- aCCCacacgcagGCCACCAgCGUGC-CCGCGg -3'
miRNA:   3'- -GGGgcaca---UGGUGGU-GUACGcGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 18564 0.7 0.609873
Target:  5'- gCUCgGUG-ACCgGCC-CGUGUGCCGCGc -3'
miRNA:   3'- -GGGgCACaUGG-UGGuGUACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 18586 0.66 0.828502
Target:  5'- gCCCaCGUGcGCCAuuagcgcgccguCCGCGgcgucgGCGCgCGCGu -3'
miRNA:   3'- -GGG-GCACaUGGU------------GGUGUa-----CGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 18701 0.74 0.378623
Target:  5'- gCCCGcGUcACCGCCA---GCGCCGCGg -3'
miRNA:   3'- gGGGCaCA-UGGUGGUguaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 18875 0.66 0.828502
Target:  5'- gCCUCGccgagcgGcGCCAgaguCCGCA-GCGCCGCGu -3'
miRNA:   3'- -GGGGCa------CaUGGU----GGUGUaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 20112 0.66 0.785255
Target:  5'- gCCCCGgacucGCCGCCcuCAUggcGCGCgGCGa -3'
miRNA:   3'- -GGGGCaca--UGGUGGu-GUA---CGCGgCGC- -5'
6515 3' -58.4 NC_001847.1 + 20252 0.66 0.828502
Target:  5'- cCCCCGcgcgcgccaUGUGCUauccuuuaaagGCCGCAcccaGCGCCgGCGu -3'
miRNA:   3'- -GGGGC---------ACAUGG-----------UGGUGUa---CGCGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 20591 0.66 0.803008
Target:  5'- gCCgCUGUGUACCA--GCAUGCcCuCGCGg -3'
miRNA:   3'- -GG-GGCACAUGGUggUGUACGcG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 22254 0.7 0.579913
Target:  5'- gCUCGUGUACgaCACCAuCGUgaGCGCCGUa -3'
miRNA:   3'- gGGGCACAUG--GUGGU-GUA--CGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 23873 0.71 0.521121
Target:  5'- cCCCCGgcccgGcGCCGCCuccgacCcgGCGCCGCc -3'
miRNA:   3'- -GGGGCa----CaUGGUGGu-----GuaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 24218 0.69 0.660026
Target:  5'- gCCCCGcgguUGUACgggGCCACGUGggucggcgccuCGCCGUGg -3'
miRNA:   3'- -GGGGC----ACAUGg--UGGUGUAC-----------GCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 27116 0.67 0.778001
Target:  5'- gCCCCGccgGCCGCCGCGgcgagagagccgGCgagggcuucucccgcGCCGCGg -3'
miRNA:   3'- -GGGGCacaUGGUGGUGUa-----------CG---------------CGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 27287 0.67 0.748228
Target:  5'- gUCCCGUcgGaGCCGCCGCcgGuCGCC-CGa -3'
miRNA:   3'- -GGGGCA--CaUGGUGGUGuaC-GCGGcGC- -5'
6515 3' -58.4 NC_001847.1 + 27431 0.78 0.224321
Target:  5'- gCCCCGggGUGCCcgcCCGCGaGCGCCGCc -3'
miRNA:   3'- -GGGGCa-CAUGGu--GGUGUaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 27507 0.66 0.820166
Target:  5'- gCCUCGgccGCCGCCGCGgcgGCGgCGgGg -3'
miRNA:   3'- -GGGGCacaUGGUGGUGUa--CGCgGCgC- -5'
6515 3' -58.4 NC_001847.1 + 27854 0.69 0.629937
Target:  5'- aCCCCGUGcggGCC-CU--GUGgGCCGCGc -3'
miRNA:   3'- -GGGGCACa--UGGuGGugUACgCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 27979 0.67 0.729092
Target:  5'- aCUUCGUGg--CGCCGCGcUGgGCCGCGc -3'
miRNA:   3'- -GGGGCACaugGUGGUGU-ACgCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 28324 0.69 0.650008
Target:  5'- aCCCUGcGUGCCGCuCGCcgGCGggcagCGCGg -3'
miRNA:   3'- -GGGGCaCAUGGUG-GUGuaCGCg----GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.